Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001044.1 Kokia drynarioides strain JFW-HI SEQ_112274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2279
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33


Found at i:319 original size:22 final size:21

Alignment explanation


    Indices: 270--322  Score: 63
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        260 CCTTTTAATT

                                *
        270 TTGTTTCTTTATATTTAGTCT
          1 TTGTTTCTTTATATTTAGTCA

                        *          
        291 TTGTTTCTTTATTTGTTAGTTCA
          1 TTGTTTCTTTATAT-TTAG-TCA

                      
        314 TT-TTTCTTT
          1 TTGTTTCTTT

        323 GAAAGTTTAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  21   13  0.46
  22   11  0.39
  23    4  0.14

ACGTcount: A:0.11, C:0.09, G:0.09, T:0.70


Consensus pattern (21 bp):   
TTGTTTCTTTATATTTAGTCA
Done.