genome.fa.s10447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010447.1 Kokia drynarioides strain JFW-HI SEQ_125342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147683

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1785--2416	29	21.9	29	77	9	418	32	2	30	34	1.71
1807--2412	59	10.5	57	77	9	532	32	2	30	34	1.71
1785--2412	88	7.2	88	79	7	586	32	2	30	34	1.71
1892--1938	22	2.2	22	88	3	69	25	0	31	42	1.55
1800--2349	146	3.9	139	77	13	395	32	2	31	34	1.71
1916--2412	117	4.2	117	80	6	477	32	2	31	33	1.72
3498--3552	11	4.9	11	77	16	51	60	1	5	32	1.30
3498--3560	34	1.9	32	87	12	92	58	1	4	34	1.29
4239--4290	11	4.7	11	82	0	68	55	3	0	40	1.18
4239--4286	16	2.9	17	82	14	64	54	4	0	41	1.20
5693--5801	29	3.8	28	77	8	92	36	3	22	36	1.72
5693--5903	30	7.1	29	80	7	140	36	3	24	36	1.72
5730--5913	60	3.1	61	81	8	184	31	3	25	39	1.73
5750--5926	90	2.0	88	83	4	221	33	3	24	38	1.72
5775--5923	30	5.0	30	84	4	131	34	2	24	38	1.70
7019--7051	11	2.8	12	86	4	50	30	3	3	63	1.24
7608--7732	6	22.0	6	72	14	104	53	2	0	44	1.13
7602--7652	17	3.1	16	88	8	75	47	0	0	52	1.00
7645--7733	11	7.8	11	75	6	61	57	3	0	39	1.15
7608--7733	17	7.8	17	79	9	129	53	2	0	43	1.13
21895--21939	16	2.9	15	87	9	63	77	4	8	8	1.10
29491--29559	3	23.3	3	91	2	113	30	1	1	66	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036--31245	103	2.0	104	95	0	377	23	11	16	48	1.78
35624--35675	20	2.5	20	81	3	68	63	7	9	19	1.48
36065--36107	12	3.6	12	80	0	50	0	32	0	67	0.91
42087--42126	5	7.6	5	83	10	53	75	0	2	22	0.93
42087--42126	11	3.8	10	81	12	53	75	0	2	22	0.93
50066--50099	17	1.9	18	94	5	61	82	0	5	11	0.83
50650--50679	14	2.1	14	93	0	51	30	0	0	70	0.88
50755--50797	3	15.0	3	90	9	72	30	0	0	69	0.88
53559--53591	17	1.9	17	93	0	57	48	9	21	21	1.77
53743--53787	17	2.6	17	96	0	81	2	31	0	66	1.04
53743--53788	9	5.3	9	76	10	51	2	30	0	67	1.03
55223--55461	52	4.6	52	90	0	370	36	24	13	25	1.92
56429--56461	16	2.1	16	94	0	57	24	18	3	54	1.57
66668--66712	24	1.9	24	90	4	74	71	0	20	8	1.12
66658--66752	20	4.4	20	75	15	84	70	1	21	7	1.17
69580--69612	13	2.6	13	85	4	50	60	0	36	3	1.12
82473--82524	26	2.0	26	96	0	95	36	11	17	34	1.86
89654--89690	15	2.6	14	87	8	56	86	0	13	0	0.57
89657--89689	17	1.9	17	93	0	57	87	0	12	0	0.53
91401--91439	13	2.8	13	88	7	51	41	2	7	48	1.45
100355--100395	21	2.0	21	90	0	64	73	2	0	24	0.96
101367--101431	34	1.9	34	84	12	89	70	10	7	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102759--102785	11	2.5	11	100	0	54	92	7	0	0	0.38
103405--103442	17	2.2	17	86	9	51	78	15	0	5	0.91
104286--104366	30	2.7	30	83	5	94	34	24	2	38	1.69
104286--104358	29	2.5	29	84	6	85	35	24	2	36	1.70
104352--104395	19	2.3	19	84	4	52	40	27	2	29	1.68
104453--104512	29	2.1	29	81	6	68	35	25	5	35	1.78
110249--110347	42	2.5	38	80	9	110	52	16	16	15	1.75
110249--110346	38	2.5	40	83	8	121	53	16	15	15	1.74
111066--111289	49	4.6	49	78	5	202	36	19	32	12	1.89
111115--111317	99	2.1	99	81	5	232	35	18	31	14	1.91
111340--111566	50	4.6	50	79	7	248	36	18	31	13	1.90
111329--111566	99	2.4	100	81	5	261	37	17	31	13	1.89
111112--111542	225	1.9	225	85	2	589	36	18	31	14	1.90
111891--112260	39	9.5	39	72	11	267	23	32	20	22	1.98
111854--112290	78	5.6	78	83	1	504	23	32	19	23	1.97
113878--114220	30	11.7	30	77	10	221	38	23	3	35	1.71
113885--114119	59	4.0	59	81	9	239	40	21	2	35	1.67
113878--114220	89	3.9	88	77	7	263	38	23	3	35	1.71
114146--114210	28	2.3	27	82	7	85	38	27	1	32	1.66
119334--119415	30	2.8	30	85	7	116	47	1	2	48	1.22
128599--128652	17	3.1	17	76	12	65	53	11	20	14	1.71
141957--142006	16	2.9	17	80	11	57	36	2	8	54	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143809--143858	23	2.2	23	85	3	66	50	14	6	30	1.66
143822--143879	23	2.5	23	91	0	89	48	13	5	32	1.65
144544--144687	23	6.3	23	90	1	218	46	18	4	30	1.69
146026--146550	59	8.9	59	85	5	443	32	5	29	32	1.79
146182--146550	29	12.6	28	78	12	318	32	5	29	32	1.79
147582--147619	19	2.0	19	89	0	58	42	0	0	57	0.98

Tables:   1

The End!