Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010448.1 Kokia drynarioides strain JFW-HI SEQ_125343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15896
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 100 characters in sequence are not A, C, G, or T
Found at i:1091 original size:28 final size:28
Alignment explanation
Indices: 1041--1116 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 28
1031 AAATTTCTTA
* * *
1041 AAAATTGGTAAAAAAAAAATTAGA-TCTTT
1 AAAATT-G-AAAAAAAAATTTAGACCCTTC
1070 AAAAGTTGAAAAAAAAATTTAGACCCTTC
1 AAAA-TTGAAAAAAAAATTTAGACCCTTC
1099 AAAATTGAAAAAAAAATT
1 AAAATTGAAAAAAAAATT
1117 GAACCCCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 28 0.67
29 12 0.29
30 2 0.05
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.26
Consensus pattern (28 bp):
AAAATTGAAAAAAAAATTTAGACCCTTC
Found at i:1128 original size:29 final size:30
Alignment explanation
Indices: 1051--1129 Score: 89
Period size: 28 Copynumber: 2.8 Consensus size: 30
1041 AAAATTGGTA
*
1051 AAAAAAAAATT-AGA-TCTTT-AAAAGTTG
1 AAAAAAAAATTGAGACCCTTTCAAAAGTTG
*
1078 AAAAAAAAATTTAGACCC-TTCAAAA-TTG
1 AAAAAAAAATTGAGACCCTTTCAAAAGTTG
1106 AAAAAAAAATTGA-ACCCCTTTCAA
1 AAAAAAAAATTGAGA-CCCTTTCAA
1130 TCTTAAACTC
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
27 12 0.27
28 23 0.51
29 10 0.22
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (30 bp):
AAAAAAAAATTGAGACCCTTTCAAAAGTTG
Found at i:1674 original size:49 final size:49
Alignment explanation
Indices: 1571--1676 Score: 133
Period size: 49 Copynumber: 2.1 Consensus size: 49
1561 AAAGTTGGTA
** * **
1571 AAAAAAATTTTGACCTTTAAAAGTTAAAAAAAAAAAATTTGGGATCGGT
1 AAAAAAATTTTGACCTTTAAAAGTTAAAAAAAAAAAATTTGAAACCCCT
*
1620 AAAAAAATTTTGGCCTTTAAAAGTTAAAAATAAAAAAATTT-AAACCCCTT
1 AAAAAAATTTTGACCTTTAAAAGTTAAAAA-AAAAAAATTTGAAACCCC-T
1670 AAAAAAA
1 AAAAAAA
1677 ATAAAATAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
49 31 0.63
50 18 0.37
ACGTcount: A:0.55, C:0.08, G:0.09, T:0.27
Consensus pattern (49 bp):
AAAAAAATTTTGACCTTTAAAAGTTAAAAAAAAAAAATTTGAAACCCCT
Found at i:2036 original size:21 final size:21
Alignment explanation
Indices: 1979--2036 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
1969 ATCACTGAAA
1979 TTGTTGAAAAATATATTCCTAAG
1 TTGTTG-AAAA-ATATTCCTAAG
* *
2002 TTG-TGAGTATATATTCCTAAG
1 TTGTTGA-AAAATATTCCTAAG
2023 TTGTTGAAAAATAT
1 TTGTTGAAAAATAT
2037 ATAAATGGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 20 0.69
22 6 0.21
23 3 0.10
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (21 bp):
TTGTTGAAAAATATTCCTAAG
Found at i:6600 original size:41 final size:41
Alignment explanation
Indices: 6553--6635 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
6543 TTTAAATTAC
6553 TTTTTTATTTTACATTATTTCTCTCTTTATCTTTTTTCTAT
1 TTTTTTATTTTACATTATTTCTCTCTTTATCTTTTTTCTAT
6594 TTTTTTATTTTACATTATTTCTCTCTTTATCTTTTTTCTAT
1 TTTTTTATTTTACATTATTTCTCTCTTTATCTTTTTTCTAT
6635 T
1 T
6636 GTTACTTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (41 bp):
TTTTTTATTTTACATTATTTCTCTCTTTATCTTTTTTCTAT
Found at i:7134 original size:33 final size:36
Alignment explanation
Indices: 7087--7154 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
7077 CCAAGAGGAG
* *
7087 AGAAAGAAGAAAGAA-A-ACAATATAAAAAAAAAAA
1 AGAAAGAAAAAAGAAGAGAAAATATAAAAAAAAAAA
*
7121 AGAAA-AAAAAAGAAGAGAAAATATAAAAATAAAA
1 AGAAAGAAAAAAGAAGAGAAAATATAAAAAAAAAA
7155 TAAAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 8 0.28
34 6 0.21
35 15 0.52
ACGTcount: A:0.79, C:0.01, G:0.12, T:0.07
Consensus pattern (36 bp):
AGAAAGAAAAAAGAAGAGAAAATATAAAAAAAAAAA
Found at i:11602 original size:17 final size:17
Alignment explanation
Indices: 11580--11624 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
11570 TTGGAAATTG
*
11580 AATTTAAGTTTATTTGA
1 AATTTAAATTTATTTGA
11597 AATTTAAATTTATTTGA
1 AATTTAAATTTATTTGA
11614 AA-TTAAATTTA
1 AATTTAAATTTA
11625 GAAAAGTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (17 bp):
AATTTAAATTTATTTGA
Found at i:11679 original size:15 final size:15
Alignment explanation
Indices: 11661--11729 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
11651 AAACAAAAGT
*
11661 CCCAATTACAAATGA
1 CCCAATTACAAATGG
*
11676 CCCAAATAACAAATGG
1 CCC-AATTACAAATGG
* *
11692 CCCAGTTACAGATGG
1 CCCAATTACAAATGG
*
11707 CCCAAATACAAATGG
1 CCCAATTACAAATGG
*
11722 TCCAATTA
1 CCCAATTA
11730 TAAAGTGCCC
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
15 30 0.70
16 13 0.30
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (15 bp):
CCCAATTACAAATGG
Found at i:11701 original size:31 final size:31
Alignment explanation
Indices: 11652--11729 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
11642 AAAAATCCAA
* *
11652 AACAAAAGTCCCAATTACAAATGACCCAAAT
1 AACAAATGGCCCAATTACAAATGACCCAAAT
* * *
11683 AACAAATGGCCCAGTTACAGATGGCCCAAAT
1 AACAAATGGCCCAATTACAAATGACCCAAAT
*
11714 -ACAAATGGTCCAATTA
1 AACAAATGGCCCAATTA
11730 TAAAGTGCCC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 14 0.35
31 26 0.65
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (31 bp):
AACAAATGGCCCAATTACAAATGACCCAAAT
Found at i:12335 original size:19 final size:20
Alignment explanation
Indices: 12306--12348 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
12296 GTTTTATTGG
*
12306 TAATAAATATT-TTGATTTAT
1 TAATAAATATTATT-AATTAT
12326 TAAT-AATATTATTAATTAT
1 TAATAAATATTATTAATTAT
12345 TAAT
1 TAAT
12349 TATTTATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TAATAAATATTATTAATTAT
Found at i:13650 original size:29 final size:29
Alignment explanation
Indices: 13617--14073 Score: 227
Period size: 29 Copynumber: 15.3 Consensus size: 29
13607 GTCCCTAAAT
13617 CTTCCAAAAATTACTATTTTACCCCCGAA
1 CTTCCAAAAATTACTATTTTACCCCCGAA
* *
13646 CTTCCAAAAA-TCCCATTTTTGA-CCCCGAA
1 CTTCCAAAAATTACTA-TTTT-ACCCCCGAA
*
13675 TCTTCTAAAAATTACTATTTTACTATTTTACCCCCGAA
1 -CTTC--CAAA--A--A--TTACTATTTTACCCCCGAA
* *
13713 CTTCCAAAAA-TCCCATTTTTGA-CCCCGAA
1 CTTCCAAAAATTACTA-TTTT-ACCCCCGAA
*
13742 TCTTCCAAAAATTACTATTTTACCCTCGAA
1 -CTTCCAAAAATTACTATTTTACCCCCGAA
* *
13772 CTTCTAAAAA-TCCTATTTT-CGACCCCGAA
1 CTTCCAAAAATTACTATTTTAC--CCCCGAA
* **
13801 TCTTCCAAAAATTATTATTTTACCCCTAAA
1 -CTTCCAAAAATTACTATTTTACCCCCGAA
* * *
13831 CTTCC-AAAATTTCTATTTTGATCCCCAAA
1 CTTCCAAAAATTACTATTTT-ACCCCCGAA
* * * * *
13860 CTCCCAAAAA-TCCCATTTTTGA-TCCCTAA
1 CTTCCAAAAATTACTA-TTTT-ACCCCCGAA
***
13889 CCTTCCAAAAATTACTATTTTACCCTTAAA
1 -CTTCCAAAAATTACTATTTTACCCCCGAA
* * **
13919 CTTCCAAAAA-TCCCATTTTTAATCCCGAA
1 CTTCCAAAAATTACTA-TTTTACCCCCGAA
** * *
13948 CCTTCTTAAAATTACCATTTTACCCCCAAA
1 -CTTCCAAAAATTACTATTTTACCCCCGAA
* * * * * **
13978 CTTCTAACAA-TCCCATTTTTAGCCTTGAA
1 CTTCCAAAAATTACTA-TTTTACCCCCGAA
* *
14007 TCTTCCAAAAATTACTATTTT-TCCTCGAA
1 -CTTCCAAAAATTACTATTTTACCCCCGAA
* * *
14036 TTTCCAAAAATTACCATTTTACCCTCGAA
1 CTTCCAAAAATTACTATTTTACCCCCGAA
14065 CTTCCAAAA
1 CTTCCAAAA
14074 GTCCTATTTT
Statistics
Matches: 327, Mismatches: 65, Indels: 72
0.70 0.14 0.16
Matches are distributed among these distances:
27 1 0.00
28 51 0.16
29 129 0.39
30 96 0.29
31 21 0.06
32 4 0.01
33 1 0.00
34 1 0.00
35 3 0.01
36 1 0.00
37 5 0.02
38 11 0.03
39 3 0.01
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (29 bp):
CTTCCAAAAATTACTATTTTACCCCCGAA
Found at i:13735 original size:67 final size:65
Alignment explanation
Indices: 13627--13823 Score: 271
Period size: 67 Copynumber: 3.1 Consensus size: 65
13617 CTTCCAAAAA
13627 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCTAAAAATTACTA
1 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTC-AAAAATTA-TA
13692 TT
64 TT
*
13694 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTC-CAAA--A-A--
1 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCAAAAATTATATT
* * * *
13753 TTACTATTTTACCCTCGAACTTCTAAAAATCCTATTTTCGACCCCGAATCTTCCAAAAATTATTA
1 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTT-CAAAAATTA-TA
13818 TT
64 TT
13820 TTAC
1 TTAC
13824 CCCTAAACTT
Statistics
Matches: 116, Mismatches: 6, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
59 48 0.41
60 1 0.01
61 4 0.03
63 2 0.02
65 4 0.03
67 57 0.49
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.36
Consensus pattern (65 bp):
TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCAAAAATTATATT
Found at i:13847 original size:59 final size:58
Alignment explanation
Indices: 13694--14083 Score: 230
Period size: 59 Copynumber: 6.7 Consensus size: 58
13684 AATTACTATT
* *
13694 TTACTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCCAAAAA
1 TTACTATTTTACCCCTGAACTTCCAAAAATCCTA-TTTTGACCCCGAATCTTCCAAAAA
*
13753 TTACTATTTTA-CCCTCGAACTTCTAAAAATCCTATTTTCGACCCCGAATCTTCCAAAAA
1 TTACTATTTTACCCCT-GAACTTCCAAAAATCCTATTTT-GACCCCGAATCTTCCAAAAA
* * * * * *
13812 TTATTATTTTACCCCTAAACTTCCAAAATTTCTATTTTGATCCCC-AAACTCCCAAAAA
1 TTACTATTTTACCCCTGAACTTCCAAAAATCCTATTTTGA-CCCCGAATCTTCCAAAAA
* * * * ** *
13870 -TCCCATTTTTGATCCCT-AACCTTCCAAAAATTACTATTTT-ACCCTTAAACTTCCAAAAA
1 TTACTA-TTTT-ACCCCTGAA-CTTCCAAAAA-TCCTATTTTGACCCCGAATCTTCCAAAAA
* * * * * * * * *
13929 -TCCCATTTTTAATCCC-GAACCTTCTTAAAATTACC-ATTTT-ACCCCCAAACTTCTAACAA
1 TTACTA-TTTT-ACCCCTGAA-CTTC-CAAAAAT-CCTATTTTGACCCCGAATCTTCCAAAAA
* * * * * * *
13988 -TCCCATTTTTAGCCTTGAATCTTCCAAAAATTACTATTTT-TCCTCGAAT-TTCCAAAAA
1 TTACTA-TTTTACCCCTGAA-CTTCCAAAAA-TCCTATTTTGACCCCGAATCTTCCAAAAA
* *
14046 TTACCATTTTA-CCCTCGAACTTCCAAAAGTCCTATTTT
1 TTACTATTTTACCCCT-GAACTTCCAAAAATCCTATTTT
14084 TGATTCCGAA
Statistics
Matches: 272, Mismatches: 42, Indels: 37
0.77 0.12 0.11
Matches are distributed among these distances:
56 8 0.03
57 14 0.05
58 52 0.19
59 181 0.67
60 17 0.06
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (58 bp):
TTACTATTTTACCCCTGAACTTCCAAAAATCCTATTTTGACCCCGAATCTTCCAAAAA
Found at i:13869 original size:88 final size:86
Alignment explanation
Indices: 13706--13927 Score: 241
Period size: 88 Copynumber: 2.5 Consensus size: 86
13696 ACTATTTTAC
* * * * *
13706 CCCCGAACTTCCAAAAATCCCATT-TTTGACCCCGAATCTTCCAAAAATTACTATTTTACCCTCG
1 CCCCGAACTTCCAAAAAT--TATTATTTTACCCCTAAACTTCC-AAAATTACTATTTTACCCTCA
* * *
13770 AACTTCTAAAAATCCTATTTTCGA
63 AACTCCCAAAAATCCCATTTTCGA
*
13794 CCCCGAATCTTCCAAAAATTATTATTTTACCCCTAAACTTCCAAAATTTCTATTTTGATCCC-CA
1 CCCCGAA-CTTCCAAAAATTATTATTTTACCCCTAAACTTCCAAAATTACTATTTT-A-CCCTCA
*
13858 AACTCCCAAAAATCCCATTTTTGA
63 AACTCCCAAAAATCCCATTTTCGA
* * * *
13882 TCCCTAACCTTCCAAAAATTACTATTTTACCCTTAAACTTCCAAAA
1 CCCCGAA-CTTCCAAAAATTATTATTTTACCCCTAAACTTCCAAAA
13928 ATCCCATTTT
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
87 16 0.14
88 85 0.74
89 14 0.12
ACGTcount: A:0.33, C:0.30, G:0.04, T:0.33
Consensus pattern (86 bp):
CCCCGAACTTCCAAAAATTATTATTTTACCCCTAAACTTCCAAAATTACTATTTTACCCTCAAAC
TCCCAAAAATCCCATTTTCGA
Found at i:13897 original size:147 final size:146
Alignment explanation
Indices: 13697--13981 Score: 390
Period size: 147 Copynumber: 1.9 Consensus size: 146
13687 TACTATTTTA
* * *
13697 CTATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCCAAAAATTACTATTT
1 CTATTTTACCCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTT
* * * * * **
13762 TACCCTCGAACTTCTAAAAATCCTATTTTCGACCCCGAATCTTCCAAAAATTATTATTTTACCCC
66 TACCCTCAAACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCCC
*
13827 TAAACTTCCAAAATTT
131 CAAACTTCCAAAATTT
* * *
13843 CTATTTTGATCCCCAAACTCCCAAAAATCCCATTTTTGATCCCTAACCTTCCAAAAATTACTATT
1 CTATTTT-ACCCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATT
* * * **
13908 TTACCCTTAAACTTCCAAAAATCCCATTTTTAATCCCGAACCTTCTTAAAATTACCATTTTACCC
65 TTACCCTCAAACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCC
13973 CCAAACTTC
130 CCAAACTTC
13982 TAACAATCCC
Statistics
Matches: 119, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
146 7 0.06
147 112 0.94
ACGTcount: A:0.32, C:0.31, G:0.03, T:0.34
Consensus pattern (146 bp):
CTATTTTACCCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTT
TACCCTCAAACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCCC
CAAACTTCCAAAATTT
Found at i:13996 original size:147 final size:147
Alignment explanation
Indices: 13706--14083 Score: 386
Period size: 147 Copynumber: 2.6 Consensus size: 147
13696 ACTATTTTAC
* * * *
13706 CCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAATCTTCCAAAAATTACTATTTTACCCTCGA
1 CCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTTTACCCTCAA
* * * * ** *
13771 ACTTCTAAAAATCCTATTTTCGACCCCGAATCTTCCAAAAATTATTATTTTACCCCTAAACTTCC
66 ACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCCCCAAACTTCC
* *
13836 AAAATTTCTATTTTGAT
131 AAAATTCCCATTTTGAT
* * *
13853 CCCCAAACTCCCAAAAATCCCATTTTTGATCCCTAACCTTCCAAAAATTACTATTTTACCCTTAA
1 CCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTTTACCCTCAA
* * ** *
13918 ACTTCCAAAAATCCCATTTTTAATCCCGAACCTTCTTAAAATTACCATTTTACCCCCAAACTTCT
66 ACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCCCCAAACTTCC
* *
13983 AACAA-TCCCATTTTTAG
131 AA-AATTCCCATTTTGAT
** * * * * * * *
14000 CCTTGAATCTTCCAAAAATTACTATTTTT--CCTCGAA-TTTCCAAAAATTACCATTTTACCCTC
1 CC-CCAAACTCCCAAAAA-TCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTTTACCCTC
* * *
14062 GAACTTCCAAAAGTCCTATTTT
64 AAACTTCCAAAAATCCCATTTT
14084 TGATTCCGAA
Statistics
Matches: 190, Mismatches: 38, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
146 42 0.22
147 127 0.67
148 13 0.07
149 8 0.04
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (147 bp):
CCCCAAACTCCCAAAAATCCCATTTTTGACCCCGAACCTTCCAAAAATTACTATTTTACCCTCAA
ACTTCCAAAAATCCCATTTTCAACCCCGAACCTTCCAAAAATTACCATTTTACCCCCAAACTTCC
AAAATTCCCATTTTGAT
Found at i:14488 original size:96 final size:95
Alignment explanation
Indices: 14350--14541 Score: 248
Period size: 96 Copynumber: 2.0 Consensus size: 95
14340 AAAACTTTAA
**
14350 AATCGAGGCAATATTCTTTTATTTCGGGATCCGAAAATTTGCGCCTTAACTCACTAGGTGCAATT
1 AATCGAGGCAATATTCTTTTATTTC-GGATCCGAAAATTTGCGCCTTAACTCACTAGGTGCAACC
*
14415 TTTCTTCAAATCGA-AGTAATCGAATACCCTT
65 TTTCTTCAAATCGAGA-TAATCAAATACCCTT
* *
14446 AATCGAGGCAATGTT-TTCTTATCTTC-GATTCCG-AAATATTGCGCCTTAACTTACTAGGTGCA
1 AATCGAGGCAATATTCTT-TTAT-TTCGGA-TCCGAAAAT-TTGCGCCTTAACTCACTAGGTGCA
*
14508 ACCTTTCTTCAAATCGAGATAATCAAATATCCTT
62 ACCTTTCTTCAAATCGAGATAATCAAATACCCTT
14542 CTCGCAAAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
95 8 0.09
96 73 0.86
97 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (95 bp):
AATCGAGGCAATATTCTTTTATTTCGGATCCGAAAATTTGCGCCTTAACTCACTAGGTGCAACCT
TTCTTCAAATCGAGATAATCAAATACCCTT
Done.