Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010458.1 Kokia drynarioides strain JFW-HI SEQ_125356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4923
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.34


Found at i:38 original size:25 final size:26

Alignment explanation


    Indices: 3--53  Score: 77
    Period size: 25  Copynumber: 2.0  Consensus size: 26

          1 AC

                        *        *    
          3 GAAAATGAAAATGACTAAAACTTAAA
          1 GAAAATGAAAATAACTAAAACCTAAA

                                      
         29 GAAAA-GAAAATAACTAAAACCTAAA
          1 GAAAATGAAAATAACTAAAACCTAAA

         54 TTACAGGAGA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  25   18  0.78
  26    5  0.22

ACGTcount: A:0.65, C:0.10, G:0.10, T:0.16


Consensus pattern (26 bp):   
GAAAATGAAAATAACTAAAACCTAAA
Done.