Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010461.1 Kokia drynarioides strain JFW-HI SEQ_125359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123911
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Warning! 108 characters in sequence are not A, C, G, or T
Found at i:275 original size:29 final size:29
Alignment explanation
Indices: 243--572 Score: 333
Period size: 29 Copynumber: 11.3 Consensus size: 29
233 CTATGAAAAA
243 CCATTTTTACCCCCGAACTTCCAAAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
* * *
272 CCATTTTTAACCCCG-ACTCCCAAAAATT
1 CCATTTTTACCCCCGAACTTCCAAAAATC
*
300 CCATTTTTACCCCCAAACTTCCAAAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
* *
329 CCATTTTTGA-CCCCGAAACTTCCAACAATT
1 CCATTTTT-ACCCCCG-AACTTCCAAAAATC
* * *
359 CTATTTTCACCCTCGAACTTCCAAAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
* * *
388 CCATTTTTAACCCCGAGACTCCCAAAAATT
1 CCATTTTTACCCCCGA-ACTTCCAAAAATC
* *
418 CCATTTTTACCCCTGAACTTTCAAAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
* * ** * *
447 CCATTTTCAACCCTAAAGCTTCCAAAAGTT
1 CCATTTTTACCCCCGAA-CTTCCAAAAATC
*
477 CCATTTTTACCACCGAACTTCCAAAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
** *
506 CCATTTTTGACCCCAAAACTTCCAAAAATT
1 CCATTTTT-ACCCCCGAACTTCCAAAAATC
*** *
536 TTGTTTTTACCCTCGAACTTCC-AAAATC
1 CCATTTTTACCCCCGAACTTCCAAAAATC
564 TCCATTTTT
1 -CCATTTTT
573 GACCTTAAAA
Statistics
Matches: 240, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
28 29 0.12
29 120 0.50
30 91 0.38
ACGTcount: A:0.32, C:0.33, G:0.04, T:0.31
Consensus pattern (29 bp):
CCATTTTTACCCCCGAACTTCCAAAAATC
Found at i:388 original size:59 final size:58
Alignment explanation
Indices: 243--576 Score: 406
Period size: 59 Copynumber: 5.7 Consensus size: 58
233 CTATGAAAAA
* *
243 CCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCCG--ACTCCCAAAAATT
1 CCATTTTTA-CCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATT
* *
300 CCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAACAATT
1 CCATTTTTA-CCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATT
* * * * *
359 CTATTTTCACCCTCGAACTTCCAAAAATCCCATTTTTAACCCCGAGACTCCCAAAAATT
1 CCATTTTTACCC-CGAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATT
* * * * *
418 CCATTTTTACCCCTGAACTTTCAAAAATCCCA-TTTTCAACCCTAAAGCTTCCAAAAGTT
1 CCATTTTTACCCC-GAACTTCCAAAAATCCCATTTTTGACCCCGAAA-CTTCCAAAAATT
*
477 CCATTTTTACCACCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCCAAAAATT
1 CCATTTTTACC-CCGAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATT
***
536 TTGTTTTTACCCTCGAACTTCC-AAAATCTCCATTTTTGACC
1 CCATTTTTACCC-CGAACTTCCAAAAATC-CCATTTTTGACC
577 TTAAAACTCT
Statistics
Matches: 240, Mismatches: 28, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
57 42 0.17
58 21 0.09
59 164 0.68
60 13 0.05
ACGTcount: A:0.31, C:0.33, G:0.04, T:0.31
Consensus pattern (58 bp):
CCATTTTTACCCCGAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAAAAATT
Found at i:583 original size:59 final size:58
Alignment explanation
Indices: 243--667 Score: 396
Period size: 59 Copynumber: 7.2 Consensus size: 58
233 CTATGAAAAA
* *
243 CCATTTTTACCCCCGAACTTCCAAAAATCCCATTTTTAACCCC--GACTCCCAAAAATT
1 CCATTTTTA-CCCCGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
* * * *
300 CCATTTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAAACTTCCAACAATT
1 CCATTTTTA-CCCCGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
* * * * *
359 CTATTTTCACCCTCGAACTTCCAAAAATCCCATTTTTAACCCCGAGACTCCCAAAAATT
1 CCATTTTTACCC-CGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
* * * * *
418 CCATTTTTACCCCTGAACTTTCAAAAATCCCATTTTCAACCCTAAAGCTTCCAAAAGTT
1 CCATTTTTACCCC-GAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
*
477 CCATTTTTACCACCGAACTTCCAAAAATCCCATTTTTGACCCCAAAACTTCCAAAAATT
1 CCATTTTTACC-CCGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
*** * **
536 TTGTTTTTACCCTCGAACTTCC-AAAATCTCCATTTTTGACCTTAAAAC-TCTC-AAAATT
1 CCATTTTTACCC-CGAACTTCCAAAAATC-CCATTTTTAACCCCAAAACTTC-CAAAAATT
* * * * * * * *
594 ACC-CTTTTACCCTAGAA-TGTCTAAAAATTCCATTTTTAAACTCTAAAATTTCCCAAAATT
1 -CCATTTTTACCC-CGAACT-TCCAAAAATCCCATTTTT-AACCCCAAAACTTCCAAAAATT
*
654 ACCATTTTTCCCCC
1 -CCATTTTTACCCC
668 AGGATTCGAA
Statistics
Matches: 307, Mismatches: 46, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
57 42 0.14
58 41 0.13
59 204 0.66
60 13 0.04
61 7 0.02
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (58 bp):
CCATTTTTACCCCGAACTTCCAAAAATCCCATTTTTAACCCCAAAACTTCCAAAAATT
Found at i:12610 original size:204 final size:205
Alignment explanation
Indices: 12197--12645 Score: 560
Period size: 204 Copynumber: 2.2 Consensus size: 205
12187 AGCGACGCGG
* * **
12197 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCTACGCTCTATGTGAGTAAATCT
1 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTCTATATGAACAAATCT
* *
12262 TCGAATCCCAGCTTCCTGATGAGACACCGAGAAGCAAGTCGAAGCAATAAACGGTTAGCTTCCTG
66 TCGAACCCCAACTTCCTGATGAGACACCGAGAAGCAAGTCGAAGCAATAAACGGTTAGCTTCCTG
* * ** * * * * * ** *
12327 ATGAGATACTGAGAAGTGGACTAAATTCGTCTTCCTGATGAGATACAGAGAAACGGATTGAAATA
131 ATGAAATACGGAGAAGTAAACGAAAATCATCTTCCTGATGAAACACAGAGAAACGGATCAAAACA
*
12392 AACGACGCGA
196 AACGACACGA
12402 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTC-A-ATGAACAAATCT
1 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTCTATATGAACAAATCT
* * * *
12465 TCGAACCCCAACTTCCTGATGAGATACTGAGAAGCAGGTCGAAGTAATAAAACGGTTAGCTTCCT
66 TCGAACCCCAACTTCCTGATGAGACACCGAGAAGCAAGTCGAAGCAAT-AAACGGTTAGCTTCCT
* *
12530 GATGAAATACGGGGAAGTAAACGAAAATCATCTTCCTGATGAAACACAGAGAAATGGATCAAAAC
130 GATGAAATACGGAGAAGTAAACGAAAATCATCTTCCTGATGAAACACAGAGAAACGGATCAAAAC
** * *
12595 AAGTGATATGA
195 AAACGACACGA
* ** * * *
12606 TCATCCTCCCAATGAGATGCTGAGAAGAAGGCCAAGTCAA
1 TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAA
12646 TGAAACCAGA
Statistics
Matches: 208, Mismatches: 35, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
203 51 0.25
204 108 0.52
205 49 0.24
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (205 bp):
TCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACGCTCTATATGAACAAATCT
TCGAACCCCAACTTCCTGATGAGACACCGAGAAGCAAGTCGAAGCAATAAACGGTTAGCTTCCTG
ATGAAATACGGAGAAGTAAACGAAAATCATCTTCCTGATGAAACACAGAGAAACGGATCAAAACA
AACGACACGA
Found at i:13085 original size:18 final size:18
Alignment explanation
Indices: 13032--13085 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 18
13022 AAACTTTTCT
13032 TTTAAGTTT-AAATTTAA
1 TTTAAGTTTAAAATTTAA
*
13049 ATTAAGTTTAAAA-TTAA
1 TTTAAGTTTAAAATTTAA
13066 TTTGAA-TTTAAAATTTAA
1 TTT-AAGTTTAAAATTTAA
13084 TT
1 TT
13086 AATTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
TTTAAGTTTAAAATTTAA
Found at i:13803 original size:16 final size:15
Alignment explanation
Indices: 13784--13813 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
13774 AATGATTACC
13784 ATTAATAATTAATAAT
1 ATTAATAA-TAATAAT
13800 ATTAATAATAATAA
1 ATTAATAATAATAA
13814 AAAAGAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTAATAATAATAAT
Found at i:22480 original size:17 final size:17
Alignment explanation
Indices: 22458--22496 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
22448 AGTTGGAGAA
* *
22458 CTTGTTTGTTGAGAGTT
1 CTTGTTTGTAGAGAATT
22475 CTTGTTTGTAGAGAATT
1 CTTGTTTGTAGAGAATT
22492 CTTGT
1 CTTGT
22497 CAAGGTGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.08, G:0.26, T:0.51
Consensus pattern (17 bp):
CTTGTTTGTAGAGAATT
Found at i:22579 original size:41 final size:41
Alignment explanation
Indices: 22486--22581 Score: 156
Period size: 41 Copynumber: 2.3 Consensus size: 41
22476 TTGTTTGTAG
* * * *
22486 AGAATTCTTGTCAAGGTGGAGATTGTTAGAATTGGGTGACT
1 AGAATTCTTGTTAAGGTGGAAATTATTAGAATTGGATGACT
22527 AGAATTCTTGTTAAGGTGGAAATTATTAGAATTGGATGACT
1 AGAATTCTTGTTAAGGTGGAAATTATTAGAATTGGATGACT
22568 AGAATTCTTGTTAA
1 AGAATTCTTGTTAA
22582 AATAAAATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (41 bp):
AGAATTCTTGTTAAGGTGGAAATTATTAGAATTGGATGACT
Found at i:25125 original size:53 final size:53
Alignment explanation
Indices: 25045--25157 Score: 199
Period size: 53 Copynumber: 2.1 Consensus size: 53
25035 ATAAAGGGCT
*
25045 GAGATTTGATTATAAATACATATAATAAGTGGCCTAAATAACAGTTTTGGACC
1 GAGATTAGATTATAAATACATATAATAAGTGGCCTAAATAACAGTTTTGGACC
*
25098 GAGATTAGGTTATAAATACATATAATAAGTGGCCTAAATAACAGTTTTGGACC
1 GAGATTAGATTATAAATACATATAATAAGTGGCCTAAATAACAGTTTTGGACC
*
25151 AAGATTA
1 GAGATTA
25158 TCTTATAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.31
Consensus pattern (53 bp):
GAGATTAGATTATAAATACATATAATAAGTGGCCTAAATAACAGTTTTGGACC
Found at i:25553 original size:14 final size:14
Alignment explanation
Indices: 25534--25570 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
25524 ATATTATATT
25534 ATTATAAATTTATC
1 ATTATAAATTTATC
25548 ATTATAAATTTATC
1 ATTATAAATTTATC
25562 ATTATAAAT
1 ATTATAAAT
25571 AGATAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATAAATTTATC
Found at i:25604 original size:14 final size:16
Alignment explanation
Indices: 25568--25604 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
25558 TATCATTATA
*
25568 AATAGATAAATGTGTG
1 AATATATAAATGTGTG
25584 AATATATAAAT-TGTG
1 AATATATAAATGTGTG
25599 -ATATAT
1 AATATAT
25605 TGTGTTGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 6 0.30
15 4 0.20
16 10 0.50
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (16 bp):
AATATATAAATGTGTG
Found at i:27741 original size:29 final size:27
Alignment explanation
Indices: 27658--27745 Score: 70
Period size: 29 Copynumber: 3.1 Consensus size: 27
27648 ATCAAGATCA
* * *
27658 AAAATAGAATTTTTGGACA-TCTAGGGT
1 AAAATGGAATTTTTGGAAATTC-GGGGT
* **
27685 AAAAGGGTAATTTTTGAGAGTTTCGGGGT
1 AAAATGG-AATTTTTG-GAAATTCGGGGT
27714 CAAAATGGAATTTTTGGAAATTCGGGGGT
1 -AAAATGGAATTTTTGGAAATTC-GGGGT
27743 AAA
1 AAA
27746 TCAAGAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
27 5 0.10
28 16 0.33
29 19 0.40
30 8 0.17
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (27 bp):
AAAATGGAATTTTTGGAAATTCGGGGT
Found at i:28735 original size:3 final size:3
Alignment explanation
Indices: 28729--28789 Score: 86
Period size: 3 Copynumber: 20.0 Consensus size: 3
28719 TTTCTTTTTT
* * *
28729 TTA TTA TTA ATG TTA TTA TTA ATA TTA TTTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
28775 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
28790 ATTAATGACA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:31742 original size:24 final size:24
Alignment explanation
Indices: 31710--31757 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
31700 ATGAAAAAGA
31710 AAGAACAATAATTCAACTTTCGAT
1 AAGAACAATAATTCAACTTTCGAT
31734 AAGAACAATAATTCAACTTTCGAT
1 AAGAACAATAATTCAACTTTCGAT
31758 GCAATAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (24 bp):
AAGAACAATAATTCAACTTTCGAT
Found at i:35402 original size:28 final size:29
Alignment explanation
Indices: 35349--35426 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 29
35339 AGATATAACA
* *
35349 ATTTGTACTAATTTTTAATTTTTTTACAAT
1 ATTT-TACTAATTTTTAATATCTTTACAAT
*
35379 ATTTTACT-ATTTTTAATATCTTTATAAT
1 ATTTTACTAATTTTTAATATCTTTACAAT
* *
35407 TTTTTAC-AATTGTATAATAT
1 ATTTTACTAATT-TTTAATAT
35427 TTTTTATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 26 0.63
29 11 0.27
30 4 0.10
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (29 bp):
ATTTTACTAATTTTTAATATCTTTACAAT
Found at i:35443 original size:11 final size:10
Alignment explanation
Indices: 35426--35472 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 10
35416 TTGTATAATA
35426 TTTTTTATAT
1 TTTTTTATAT
35436 TGTTTTTATAT
1 T-TTTTTATAT
35447 TTTTTTAATAAT
1 TTTTTT-AT-AT
35459 TTTTATTAT-T
1 TTTT-TTATAT
35469 TTTT
1 TTTT
35473 ACAGTTCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 11 0.33
11 12 0.36
12 8 0.24
13 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (10 bp):
TTTTTTATAT
Found at i:35446 original size:20 final size:21
Alignment explanation
Indices: 35423--35473 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
35413 CAATTGTATA
**
35423 ATATTTTTTAT-ATTGTTTTT
1 ATATTTTTTATAATAATTTTT
35443 ATATTTTTT-TAATAATTTTT
1 ATATTTTTTATAATAATTTTT
35463 ATTATTTTTTA
1 A-TATTTTTTA
35474 CAGTTCTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 17 0.65
21 8 0.31
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (21 bp):
ATATTTTTTATAATAATTTTT
Found at i:36907 original size:58 final size:60
Alignment explanation
Indices: 36836--36948 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 60
36826 TTAATATAAC
*
36836 ATTTGGTATCTGAACTT-GACA-TTGTTTTT-TAATTTGGTACCTAAACTTTTTTGACCCA
1 ATTTGGTACCTGAACTTAGA-ATTTGTTTTTCTAATTTGGTACCTAAACTTTTTTGACCCA
* * *
36894 ATTTGGTACCTGAACTTAGAATTTTTTTTTCCTAATTTGGTACTTAAGCTTTTTT
1 ATTTGGTACCTGAACTTAGAATTTGTTTTT-CTAATTTGGTACCTAAACTTTTTT
36949 TTTTTAGATT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
58 17 0.36
59 9 0.19
61 21 0.45
ACGTcount: A:0.23, C:0.14, G:0.13, T:0.50
Consensus pattern (60 bp):
ATTTGGTACCTGAACTTAGAATTTGTTTTTCTAATTTGGTACCTAAACTTTTTTGACCCA
Found at i:37219 original size:31 final size:32
Alignment explanation
Indices: 37184--37278 Score: 121
Period size: 31 Copynumber: 3.2 Consensus size: 32
37174 AAAAAGTGTC
37184 AAGTTTAAGTATCAAATTAAGA-AAAAATATT
1 AAGTTTAAGTATCAAATTAAGACAAAAATATT
*
37215 AAGTTTAAATATCAAATT-AGACAAAAA-A--
1 AAGTTTAAGTATCAAATTAAGACAAAAATATT
* *
37243 AAATTTAAGTATCAAATTAA-AGAAAAATATT
1 AAGTTTAAGTATCAAATTAAGACAAAAATATT
37274 AAGTT
1 AAGTT
37279 CAAATACCAG
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
28 22 0.41
29 2 0.04
30 4 0.07
31 26 0.48
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (32 bp):
AAGTTTAAGTATCAAATTAAGACAAAAATATT
Found at i:38963 original size:24 final size:23
Alignment explanation
Indices: 38924--38969 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
38914 TATTACAAGC
38924 AAAAAAAATTAGTATTAAAAATA
1 AAAAAAAATTAGTATTAAAAATA
* *
38947 AAAATAAAATTATTATTATAAAT
1 AAAA-AAAATTAGTATTAAAAAT
38970 TCGAGCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAAAAAATTAGTATTAAAAATA
Found at i:39548 original size:5 final size:5
Alignment explanation
Indices: 39538--39563 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
39528 ACGACTAAAG
39538 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
39564 TGTCTAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:44386 original size:2 final size:2
Alignment explanation
Indices: 44374--44417 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
44364 GACAACCTCG
*
44374 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
44416 TA
1 TA
44418 ACATCAACAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:47698 original size:30 final size:29
Alignment explanation
Indices: 47664--47724 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
47654 ACATTTGAAT
*
47664 CAAAATCAAAGTTTAATGTGT-ATAATTGCA
1 CAAAATCAAA-TTTAATGTATCA-AATTGCA
* *
47694 CAAAATTAAATTTCATGTATCAAATTGCA
1 CAAAATCAAATTTAATGTATCAAATTGCA
47723 CA
1 CA
47725 TTGAATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (29 bp):
CAAAATCAAATTTAATGTATCAAATTGCA
Found at i:48249 original size:31 final size:31
Alignment explanation
Indices: 48188--48249 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
48178 GCTTAGTAAC
*
48188 TTAAATAAAAATTTTCAAATAGTTCGGTGAT
1 TTAAATAAAAATTTTCAAATAGTTCAGTGAT
* *
48219 TTAAATGAAAAATTTT-GAATAGTTTAGTGAT
1 TTAAAT-AAAAATTTTCAAATAGTTCAGTGAT
48250 CATTTTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (31 bp):
TTAAATAAAAATTTTCAAATAGTTCAGTGAT
Found at i:55813 original size:103 final size:103
Alignment explanation
Indices: 55668--55875 Score: 346
Period size: 103 Copynumber: 2.0 Consensus size: 103
55658 TTTTAATACG
* *
55668 AAGAAGCAAATAATCCGTAATGATGATATTCTCGTCATCCTTATTAATACGATTGATGATATGCT
1 AAGAAGCAAATAACCCGTAACGATGATATTCTCGTCATCCTTATTAATACGATTGATGATATGCT
55733 GCAATATTATTTCTAATTGCCCACTCCATCCCATGATC
66 GCAATATTATTTCTAATTGCCCACTCCATCCCATGATC
* *
55771 AAGAAGCAAATAACCCGTAACGGTGATA-TCTTCGTCATCCTTATTAATACTATTGATGATATGC
1 AAGAAGCAAATAACCCGTAACGATGATATTC-TCGTCATCCTTATTAATACGATTGATGATATGC
* *
55835 TTCAATATTATTTCTAATTGCCCACTCCATCCCCTGATC
65 TGCAATATTATTTCTAATTGCCCACTCCATCCCATGATC
55874 AA
1 AA
55876 TAGCCATCCC
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 2 0.02
103 96 0.98
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.34
Consensus pattern (103 bp):
AAGAAGCAAATAACCCGTAACGATGATATTCTCGTCATCCTTATTAATACGATTGATGATATGCT
GCAATATTATTTCTAATTGCCCACTCCATCCCATGATC
Found at i:58136 original size:3 final size:3
Alignment explanation
Indices: 58128--58181 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
58118 CATCTTGCCA
* * * *
58128 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TGT TAT TGT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
58176 TAT TAT
1 TAT TAT
58182 AGAGGTCATA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:60088 original size:16 final size:16
Alignment explanation
Indices: 60067--60105 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
60057 AGGGTCTGAA
60067 TGAGAGAATGAGAGAG
1 TGAGAGAATGAGAGAG
*
60083 TGAGAGAGTGAGAGAG
1 TGAGAGAATGAGAGAG
60099 TGA-AGAA
1 TGAGAGAA
60106 AGAATAGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.13
Consensus pattern (16 bp):
TGAGAGAATGAGAGAG
Found at i:60098 original size:8 final size:8
Alignment explanation
Indices: 60067--60101 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
60057 AGGGTCTGAA
*
60067 TGAGAGAA
1 TGAGAGAG
60075 TGAGAGAG
1 TGAGAGAG
60083 TGAGAGAG
1 TGAGAGAG
60091 TGAGAGAG
1 TGAGAGAG
60099 TGA
1 TGA
60102 AGAAAGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (8 bp):
TGAGAGAG
Found at i:67792 original size:18 final size:17
Alignment explanation
Indices: 67761--67795 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
67751 GGTTTAAGGT
67761 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
67778 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
67796 AAATCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:69266 original size:17 final size:15
Alignment explanation
Indices: 69243--69282 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
69233 ATACTAAAAA
69243 TATAATTTTATTATTT
1 TATAATTTTATT-TTT
69259 TAATAA-TTTATTTTT
1 T-ATAATTTTATTTTT
69274 TATAATTTT
1 TATAATTTT
69283 TAAATGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.18
15 7 0.32
16 7 0.32
17 4 0.18
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATAATTTTATTTTT
Found at i:69470 original size:27 final size:27
Alignment explanation
Indices: 69422--69490 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
69412 CGTCACTGAT
69422 TTATTATTTTAATTTAGT-TATTAAAAA
1 TTATTATTTTAATTTAGTAT-TTAAAAA
*
69449 TTATTATTTTAATATTTA-TATTTAAATA
1 TTATTATTTT-A-ATTTAGTATTTAAAAA
69477 TT-TTA-TTTAATTTA
1 TTATTATTTTAATTTA
69491 TATCATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
24 5 0.13
25 1 0.03
26 3 0.08
27 13 0.34
28 10 0.26
29 6 0.16
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (27 bp):
TTATTATTTTAATTTAGTATTTAAAAA
Found at i:69476 original size:14 final size:13
Alignment explanation
Indices: 69442--69486 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
69432 AATTTAGTTA
*
69442 TTAAAAATTATTAT
1 TTAAATATT-TTAT
*
69456 TTTAATATTTATAT
1 TTAAATATTT-TAT
69470 TTAAATATTTTAT
1 TTAAATATTTTAT
69483 TTAA
1 TTAA
69487 TTTATATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 8 0.30
14 19 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTAAATATTTTAT
Found at i:69810 original size:16 final size:16
Alignment explanation
Indices: 69783--69824 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
69773 CTCTATTATC
69783 AAATATATTTTAAAAGA
1 AAATA-ATTTTAAAAGA
* *
69800 AAATAATTTTAATATA
1 AAATAATTTTAAAAGA
69816 AAAT-ATTTT
1 AAATAATTTT
69825 CTTTCACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 5 0.22
16 13 0.57
17 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
AAATAATTTTAAAAGA
Found at i:71755 original size:22 final size:21
Alignment explanation
Indices: 71725--71768 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
71715 AATTAATTTT
71725 AATATTTAAAATAATTTTATATA
1 AATATTTAAAAT-ATTTTA-ATA
*
71748 AATA-TTAATATATTTTAATA
1 AATATTTAAAATATTTTAATA
71768 A
1 A
71769 TGAAATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 6 0.30
22 6 0.30
23 4 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATATTTAAAATATTTTAATA
Found at i:73009 original size:7 final size:7
Alignment explanation
Indices: 72989--73026 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
72979 AATCAAACTC
72989 AATTT-A
1 AATTTCA
*
72995 AATATCA
1 AATTTCA
73002 AATTTCA
1 AATTTCA
73009 AATTTCA
1 AATTTCA
*
73016 AATTTCG
1 AATTTCA
73023 AATT
1 AATT
73027 GATTTTGAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
6 4 0.14
7 24 0.86
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.42
Consensus pattern (7 bp):
AATTTCA
Found at i:75128 original size:13 final size:14
Alignment explanation
Indices: 75081--75136 Score: 53
Period size: 13 Copynumber: 4.1 Consensus size: 14
75071 TCACATAAAT
**
75081 AAATTAAAAAAATA
1 AAATTAAAAATTTA
* *
75095 ATATTAACAA-TTA
1 AAATTAAAAATTTA
*
75108 AAATTAAAATTTTA
1 AAATTAAAAATTTA
75122 AAA-TAAAAATTTA
1 AAATTAAAAATTTA
75135 AA
1 AA
75137 GAGTAAATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
13 20 0.59
14 14 0.41
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTAAAAATTTA
Found at i:82642 original size:42 final size:42
Alignment explanation
Indices: 82594--82673 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
82584 GATCCATTAA
* **
82594 TACCTTCTTATATAATT-CATTGTTTTCTTGATGAATTAGGTT
1 TACCTTCTTATAGAATTCCA-CATTTTCTTGATGAATTAGGTT
*
82636 TACCTTCTTATAGAGTTCCACATTTTCTTGATGAATTA
1 TACCTTCTTATAGAATTCCACATTTTCTTGATGAATTA
82674 TGTTCCCCTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.49
Consensus pattern (42 bp):
TACCTTCTTATAGAATTCCACATTTTCTTGATGAATTAGGTT
Found at i:83818 original size:354 final size:354
Alignment explanation
Indices: 83169--83877 Score: 1382
Period size: 354 Copynumber: 2.0 Consensus size: 354
83159 TTTACAGGAA
83169 AGAAAATTATGGCTAGGACCACTAGTCTGTGTGTGTTCATTTTAGTTGAAGGATGAATGATTCAT
1 AGAAAATTATGGCTAGGACCACTAGTCTGTGTGTGTTCATTTTAGTTGAAGGATGAATGATTCAT
*
83234 TCAGTCTGATCTTTAGATATATATGAATTAAGGATAGAACATTCTAATCATAATTGCATCACAAA
66 TCAGTCTGATCTTTAGATATATATGAATCAAGGATAGAACATTCTAATCATAATTGCATCACAAA
83299 AGGTTGGAATAAGTAATTCTAAAATCCATGGAGAAAGACGCTGTTATTTGGTTGAAAAGTATGAA
131 AGGTTGGAATAAGTAATTCTAAAATCCATGGAGAAAGACGCTGTTATTTGGTTGAAAAGTATGAA
83364 GCTTTCTGTGTTGAACCAATACATATGGGCATAAGTGTTGTGTTTGGAAGAAAGCGTAATGTAAA
196 GCTTTCTGTGTTGAACCAATACATATGGGCATAAGTGTTGTGTTTGGAAGAAAGCGTAATGTAAA
*
83429 AGTAGTTCTTGATTCTGCATTTTTGGTTCATTGTATTTTCTCATTGATGTTTAATATGATTCATT
261 AGTAGTTCTTGATTCTGCATTTTTGGTTCATTGTATTTTCTCATTGATGTTTAATATGATGCATT
*
83494 TGTATTGTCTAAAAATTGGTTTACCTGTG
326 TGTATTGTCAAAAAATTGGTTTACCTGTG
83523 AGAAAATTATGGCTAGGACCACTAGTCTGTGTGTGTTCATTTTAGTTGAAGGATGAATGATTCAT
1 AGAAAATTATGGCTAGGACCACTAGTCTGTGTGTGTTCATTTTAGTTGAAGGATGAATGATTCAT
83588 TCAGTCTGATCTTTAGATATATATGAATCAAGGATAGAACATTCTAATCATAATTGCATCACAAA
66 TCAGTCTGATCTTTAGATATATATGAATCAAGGATAGAACATTCTAATCATAATTGCATCACAAA
83653 AGGTTGGAATAAGTAATTCTAAAATCCATGGAGAAAGACGCTGTTATTTGGTTGAAAAGTATGAA
131 AGGTTGGAATAAGTAATTCTAAAATCCATGGAGAAAGACGCTGTTATTTGGTTGAAAAGTATGAA
*
83718 GCTTTCTGTGTTGAACCAATACATATGGGCATAAGTGTTGTGTTTGGAAGAAAGTGTAATGTAAA
196 GCTTTCTGTGTTGAACCAATACATATGGGCATAAGTGTTGTGTTTGGAAGAAAGCGTAATGTAAA
83783 AGTAGTTCTTGATTCTGCATTTTTGGTTCATTGTATTTTCTCATTGATGTTTAATATGATGCATT
261 AGTAGTTCTTGATTCTGCATTTTTGGTTCATTGTATTTTCTCATTGATGTTTAATATGATGCATT
83848 TGTATTGTCAAAAAATTGGTTTACCTGTG
326 TGTATTGTCAAAAAATTGGTTTACCTGTG
83877 A
1 A
83878 TTTTCTTGCA
Statistics
Matches: 351, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
354 351 1.00
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (354 bp):
AGAAAATTATGGCTAGGACCACTAGTCTGTGTGTGTTCATTTTAGTTGAAGGATGAATGATTCAT
TCAGTCTGATCTTTAGATATATATGAATCAAGGATAGAACATTCTAATCATAATTGCATCACAAA
AGGTTGGAATAAGTAATTCTAAAATCCATGGAGAAAGACGCTGTTATTTGGTTGAAAAGTATGAA
GCTTTCTGTGTTGAACCAATACATATGGGCATAAGTGTTGTGTTTGGAAGAAAGCGTAATGTAAA
AGTAGTTCTTGATTCTGCATTTTTGGTTCATTGTATTTTCTCATTGATGTTTAATATGATGCATT
TGTATTGTCAAAAAATTGGTTTACCTGTG
Found at i:87176 original size:420 final size:420
Alignment explanation
Indices: 86397--87236 Score: 1653
Period size: 420 Copynumber: 2.0 Consensus size: 420
86387 TAATGTGTGG
86397 AGACCATCTAGGGTAAGACCTATCACAAGCTTTAGTTTGTTTCACACTAGGCTTATATAGGTTTT
1 AGACCATCTAGGGTAAGACCTATCACAAGCTTTAGTTTGTTTCACACTAGGCTTATATAGGTTTT
*
86462 TTGAATGAAAAAATATATACAAGGTAGGGCAAACTTAGAGAAACTTTAACACCACAGTTTAATCT
66 TTGAATGAAAAAAAATATACAAGGTAGGGCAAACTTAGAGAAACTTTAACACCACAGTTTAATCT
86527 AAGATACAAATCCTAAGAACTAATAATGCTAAAGAGTATTTCAAATCCAACTTAGGGTTTTACCT
131 AAGATACAAATCCTAAGAACTAATAATGCTAAAGAGTATTTCAAATCCAACTTAGGGTTTTACCT
86592 AACAAGTCAATGCATGGTTCACCAAAGTTCATATGTAATCACAACCCAACAAAAGCATGTATTTG
196 AACAAGTCAATGCATGGTTCACCAAAGTTCATATGTAATCACAACCCAACAAAAGCATGTATTTG
86657 ATAAACAGAATGCCCTCTAGGATTTTATGTTCTCAAATCTTTTCTAAGTATAATCCCTTACCTTA
261 ATAAACAGAATGCCCTCTAGGATTTTATGTTCTCAAATCTTTTCTAAGTATAATCCCTTACCTTA
86722 ATTGTTCCTTTGAAAATATCTAGGTGTATTTCTACCCATAAACCACGAACTCTATTGAGGTAAAC
326 ATTGTTCCTTTGAAAATATCTAGGTGTATTTCTACCCATAAACCACGAACTCTATTGAGGTAAAC
86787 TAAATCTTAGTCATTAATGCTGCGTTTGGA
391 TAAATCTTAGTCATTAATGCTGCGTTTGGA
86817 AGACCATCTAGGGTAAGACCTATCACAAGCTTTAGTTTGTTTCACACTAGGCTTATATAGGTTTT
1 AGACCATCTAGGGTAAGACCTATCACAAGCTTTAGTTTGTTTCACACTAGGCTTATATAGGTTTT
* *
86882 TTGAATGAAAAAAAATATATAAGGTAGGGCAAACTTAGAGAAGCTTTAACACCACAGTTTAATCT
66 TTGAATGAAAAAAAATATACAAGGTAGGGCAAACTTAGAGAAACTTTAACACCACAGTTTAATCT
86947 AAGATACAAATCCTAAGAACTAATAATGCTAAAGAGTATTTCAAATCCAACTTAGGGTTTTACCT
131 AAGATACAAATCCTAAGAACTAATAATGCTAAAGAGTATTTCAAATCCAACTTAGGGTTTTACCT
87012 AACAAGTCAATGCATGGTTCACCAAAGTTCATATGTAATCACAACCCAACAAAAGCATGTATTTG
196 AACAAGTCAATGCATGGTTCACCAAAGTTCATATGTAATCACAACCCAACAAAAGCATGTATTTG
87077 ATAAACAGAATGCCCTCTAGGATTTTATGTTCTCAAATCTTTTCTAAGTATAATCCCTTACCTTA
261 ATAAACAGAATGCCCTCTAGGATTTTATGTTCTCAAATCTTTTCTAAGTATAATCCCTTACCTTA
87142 ATTGTTCCTTTGAAAATATCTAGGTGTATTTCTACCCATAAACCACGAACTCTATTGAGGTAAAC
326 ATTGTTCCTTTGAAAATATCTAGGTGTATTTCTACCCATAAACCACGAACTCTATTGAGGTAAAC
87207 TAAATCTTAGTCATTAATGCTGCGTTTGGA
391 TAAATCTTAGTCATTAATGCTGCGTTTGGA
87237 TACTAGTGTA
Statistics
Matches: 417, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
420 417 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (420 bp):
AGACCATCTAGGGTAAGACCTATCACAAGCTTTAGTTTGTTTCACACTAGGCTTATATAGGTTTT
TTGAATGAAAAAAAATATACAAGGTAGGGCAAACTTAGAGAAACTTTAACACCACAGTTTAATCT
AAGATACAAATCCTAAGAACTAATAATGCTAAAGAGTATTTCAAATCCAACTTAGGGTTTTACCT
AACAAGTCAATGCATGGTTCACCAAAGTTCATATGTAATCACAACCCAACAAAAGCATGTATTTG
ATAAACAGAATGCCCTCTAGGATTTTATGTTCTCAAATCTTTTCTAAGTATAATCCCTTACCTTA
ATTGTTCCTTTGAAAATATCTAGGTGTATTTCTACCCATAAACCACGAACTCTATTGAGGTAAAC
TAAATCTTAGTCATTAATGCTGCGTTTGGA
Found at i:89056 original size:27 final size:28
Alignment explanation
Indices: 89003--89056 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
88993 GCGACGAAAA
* * *
89003 ATAAAAAATTCGAATAGTTGAGTAACTT
1 ATAAAAAATTCAAATAGGTGAGCAACTT
*
89031 ATAAAAAATT-AAATAGGTGGGCAACT
1 ATAAAAAATTCAAATAGGTGAGCAACT
89057 ATCCTTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (28 bp):
ATAAAAAATTCAAATAGGTGAGCAACTT
Found at i:91141 original size:79 final size:79
Alignment explanation
Indices: 91010--91170 Score: 313
Period size: 79 Copynumber: 2.0 Consensus size: 79
91000 ATCCATTATG
91010 ATTCATGCATCAGATTTATTGATAATGAGGAAGTAAAATTGCAAGTTTTAATTTGATTGAACATG
1 ATTCATGCATCAGATTTATTGATAATGAGGAAGTAAAATTGCAAGTTTTAATTTGATTGAACATG
91075 ACATTTTTCTATTT
66 ACATTTTTCTATTT
*
91089 ATTCATGCTTCAGATTTATTGATAATGAGGAAGTAAAATTGCAAGTTTTAATTTGATTGAACATG
1 ATTCATGCATCAGATTTATTGATAATGAGGAAGTAAAATTGCAAGTTTTAATTTGATTGAACATG
91154 ACATTTTTCTATTT
66 ACATTTTTCTATTT
91168 ATT
1 ATT
91171 TTATTGGTTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (79 bp):
ATTCATGCATCAGATTTATTGATAATGAGGAAGTAAAATTGCAAGTTTTAATTTGATTGAACATG
ACATTTTTCTATTT
Found at i:101704 original size:17 final size:16
Alignment explanation
Indices: 101682--101713 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
101672 AGTAAAAGTA
101682 TTTTTAAGTTTTTTTAT
1 TTTTTAA-TTTTTTTAT
101699 TTTTTAATTTTTTTA
1 TTTTTAATTTTTTTA
101714 GTATTTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTTAATTTTTTTAT
Found at i:102514 original size:16 final size:17
Alignment explanation
Indices: 102490--102528 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
102480 GTTATATTTC
*
102490 AAAAGAAAATAT-TAGT
1 AAAAGAAAAAATATAGT
*
102506 AAAATAAAAAATATAGT
1 AAAAGAAAAAATATAGT
102523 AAAAGA
1 AAAAGA
102529 TATAAGTGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (17 bp):
AAAAGAAAAAATATAGT
Found at i:110118 original size:21 final size:21
Alignment explanation
Indices: 110073--110115 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
110063 TAAAAAATGT
*
110073 ATAAAATTATTAAATATTAAA
1 ATAAAATTATTAAAAATTAAA
*
110094 ATAAATATTTTTAAAAATTAAA
1 ATAAA-ATTATTAAAAATTAAA
110116 TAATAATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAAAATTATTAAAAATTAAA
Found at i:115122 original size:87 final size:87
Alignment explanation
Indices: 114976--115142 Score: 280
Period size: 87 Copynumber: 1.9 Consensus size: 87
114966 ATGAAACTAT
* * *
114976 TTTTAGGTTCTTGATTAGTTTGGAAATAAGAGAAGGGTTTGATTTACACGTAATGGATGTAGCTA
1 TTTTAGGTTCTTGATTAGTTTAGAAATAAGAGAAGGGCTTGATTTACACCTAATGGATGTAGCTA
115041 CAACCTATTTATATGCAATTCC
66 CAACCTATTTATATGCAATTCC
* *
115063 TTTTAGGTTTTTTATTAGTTTAGAAATAAGAGAAGGGCTTGATTTACACCTAATGGATGTAGCTA
1 TTTTAGGTTCTTGATTAGTTTAGAAATAAGAGAAGGGCTTGATTTACACCTAATGGATGTAGCTA
*
115128 CAACGTATTTATATG
66 CAACCTATTTATATG
115143 ACCCACTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (87 bp):
TTTTAGGTTCTTGATTAGTTTAGAAATAAGAGAAGGGCTTGATTTACACCTAATGGATGTAGCTA
CAACCTATTTATATGCAATTCC
Found at i:116504 original size:26 final size:26
Alignment explanation
Indices: 116467--116529 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
116457 TTTATTGAGG
*
116467 CTATTAGTTTATCAATAAA-TAATATT
1 CTATTAATTTATCAATAAATTAATA-T
* *
116493 TTATTAATTTATCGATAAATTAATAT
1 CTATTAATTTATCAATAAATTAATAT
116519 CTATTAATTTA
1 CTATTAATTTA
116530 GAGAATATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 27 0.84
27 5 0.16
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.49
Consensus pattern (26 bp):
CTATTAATTTATCAATAAATTAATAT
Found at i:116716 original size:33 final size:33
Alignment explanation
Indices: 116639--116716 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
116629 CATGTATCAA
* **
116639 AGTTAATTGGTTCATGTAACCAAAAAAAGAATT
1 AGTTAATTGGTTCATGTAACCAAAAAAAAAAAG
*
116672 AATTAATTGGTTCATGTAACCAAAAAGAAAAAAG
1 AGTTAATTGGTTCATGTAACCAAAAA-AAAAAAG
116706 AGTTAA-TGGTT
1 AGTTAATTGGTT
116717 TCAAAATCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (33 bp):
AGTTAATTGGTTCATGTAACCAAAAAAAAAAAG
Found at i:119007 original size:30 final size:29
Alignment explanation
Indices: 118966--119303 Score: 208
Period size: 30 Copynumber: 11.4 Consensus size: 29
118956 CTCGAGGGTG
*
118966 AAATGGTAATTTTGGGAAATTCGAGGTTAA
1 AAATGG-AATTTTTGGAAATTCGAGGTTAA
* * * *
118996 AAATGGAAATTTT-AAACATT-TAGGGGTAA
1 AAATGGAATTTTTGGAA-ATTCGA-GGTTAA
** ** *
119025 AAGGGGTAA-TTTTGAGAGTTTCGAGGTAAA
1 AAATGG-AATTTTTG-GAAATTCGAGGTTAA
* * * *
119055 AAATGGAGTTTTTGGATATTCGGGGGT-A
1 AAATGGAATTTTTGGAAATTCGAGGTTAA
*
119083 AAATGGTAATTTTT-GAAAGTTTC-AGCGTCAA
1 AAATGG-AATTTTTGGAAA--TTCGAG-GTTAA
* *
119114 AAATGGAATTTTTGGAAGTTC-AGGGCTAA
1 AAATGGAATTTTTGGAAATTCGA-GGTTAA
* * *
119143 AAATGGAATTTTTGGAAGTTTTGAGGTCAA
1 AAATGGAATTTTTGGAA-ATTCGAGGTTAA
* * * *
119173 AAATGGGATTTTTGGAAGTTTCGGGGTCAA
1 AAATGGAATTTTTGGAA-ATTCGAGGTTAA
* * *
119203 AAATGGAATTTTTGGAAGTTTGAGGGTAA
1 AAATGGAATTTTTGGAAATTCGAGGTTAA
*
119232 AAATGGAATTTTTGGAAGTTTCGAGGTTAA
1 AAATGGAATTTTTGGAA-ATTCGAGGTTAA
* *
119262 AAATAGG-ATTTTTGGAAGTTC-AGGGGTAA
1 AAAT-GGAATTTTTGGAAATTCGA-GGTTAA
119291 AAATGGAATTTTT
1 AAATGGAATTTTT
119304 AAACAGCTTA
Statistics
Matches: 241, Mismatches: 47, Indels: 41
0.73 0.14 0.12
Matches are distributed among these distances:
28 16 0.07
29 103 0.43
30 107 0.44
31 15 0.06
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (29 bp):
AAATGGAATTTTTGGAAATTCGAGGTTAA
Found at i:119081 original size:59 final size:59
Alignment explanation
Indices: 119017--119251 Score: 222
Period size: 59 Copynumber: 4.0 Consensus size: 59
119007 TTAAACATTT
* *
119017 AGGGGTAAAAGGGGTAA-TTTTGAGAGTTTCGAGGTAAAAAATGGAGTTTTTGGATA-TTC
1 AGGGGTAAAA-TGGTAATTTTTGAGAGTTTCGAGGTCAAAAATGGAGTTTTTGGA-AGTTC
* * *
119076 GGGGGTAAAATGGTAATTTTTGAAAGTTTC-AGCGTCAAAAATGGAATTTTTGGAAGTTC
1 AGGGGTAAAATGGTAATTTTTGAGAGTTTCGAG-GTCAAAAATGGAGTTTTTGGAAGTTC
* *
119135 AGGGCTAAAAATGG-AATTTTTG-GAAGTTTTGAGGTCAAAAATGG-GATTTTTGGAAGTTTC
1 AGGGGT-AAAATGGTAATTTTTGAG-AGTTTCGAGGTCAAAAATGGAG-TTTTTGGAAG-TTC
*
119195 -GGGGTCAAAAATGG-AATTTTTG-GAAGTTT-GAGGGT-AAAAATGGAATTTTTGGAAGTT
1 AGGGGT--AAAATGGTAATTTTTGAG-AGTTTCGA-GGTCAAAAATGGAGTTTTTGGAAGTT
119252 TCGAGGTTAA
Statistics
Matches: 153, Mismatches: 12, Indels: 23
0.81 0.06 0.12
Matches are distributed among these distances:
58 10 0.07
59 105 0.69
60 38 0.25
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (59 bp):
AGGGGTAAAATGGTAATTTTTGAGAGTTTCGAGGTCAAAAATGGAGTTTTTGGAAGTTC
Found at i:119248 original size:89 final size:89
Alignment explanation
Indices: 119082--119303 Score: 324
Period size: 89 Copynumber: 2.5 Consensus size: 89
119072 ATTCGGGGGT
* * * *
119082 AAAATGGTAATTTTTGAAAGTTTCAGCGTCAAAAATGGAATTTTTGGAAGTTCAGGGCTAAAAAT
1 AAAATGG-GATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCAGGGCTAAAAAT
*
119147 GGAATTTTTGGAAGTTTTGAGGTCA
65 GGAATTTTTGGAAGTTTCGAGGTCA
*
119172 AAAATGGGATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTTGAGGG-TAAAAAT
1 AAAATGGGATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAG-TTCAGGGCTAAAAAT
*
119236 GGAATTTTTGGAAGTTTCGAGGTTA
65 GGAATTTTTGGAAGTTTCGAGGTCA
*
119261 AAAATAGGATTTTTGGAAG-TTCAGGGGT-AAAAATGGAATTTTT
1 AAAATGGGATTTTTGGAAGTTTC-GGGGTCAAAAATGGAATTTTT
119304 AAACAGCTTA
Statistics
Matches: 122, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
88 18 0.15
89 91 0.75
90 13 0.11
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.35
Consensus pattern (89 bp):
AAAATGGGATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCAGGGCTAAAAATG
GAATTTTTGGAAGTTTCGAGGTCA
Found at i:119252 original size:59 final size:60
Alignment explanation
Indices: 119053--119303 Score: 281
Period size: 59 Copynumber: 4.2 Consensus size: 60
119043 TTTCGAGGTA
* * *
119053 AAAAATGGAGTTTTTGG-A-TATTCGGGGGT--AAAATGGTAATTTTTGAAAGTTTCAGCGTC
1 AAAAATGGAATTTTTGGAAGT-TTC-GGGGTCAAAAATGG-AATTTTTGGAAGTTTCAGGGTC
* *
119112 AAAAATGGAATTTTTGGAAG-TTCAGGG-CTAAAAATGGAATTTTTGGAAGTTT-TGAGGTC
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTC-AAAAATGGAATTTTTGGAAGTTTCAG-GGTC
* *
119171 AAAAATGGGATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTTGAGGGT-
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTTCAGGGTC
* *
119230 AAAAATGGAATTTTTGGAAGTTTCGAGGTTAAAAATAGG-ATTTTTGGAAG-TTCAGGGGT-
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAAT-GGAATTTTTGGAAGTTTCA-GGGTC
119289 AAAAATGGAATTTTT
1 AAAAATGGAATTTTT
119304 AAACAGCTTA
Statistics
Matches: 169, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
58 7 0.04
59 118 0.70
60 42 0.25
61 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (60 bp):
AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTTCAGGGTC
Found at i:121017 original size:15 final size:15
Alignment explanation
Indices: 120999--121049 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
120989 CATTGGTCCG
120999 TTTGTAATTGGGCCA
1 TTTGTAATTGGGCCA
* *
121014 TTTGTACTTGGGCCG
1 TTTGTAATTGGGCCA
121029 TTTGTAATTGGGCCA
1 TTTGTAATTGGGCCA
121044 TTTGTA
1 TTTGTA
121050 CTTTGTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (15 bp):
TTTGTAATTGGGCCA
Found at i:121032 original size:30 final size:30
Alignment explanation
Indices: 120991--121052 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
120981 CTTTGGGCCA
*
120991 TTGGTCCGTTTGTAATTGGGCCATTTGTAC
1 TTGGGCCGTTTGTAATTGGGCCATTTGTAC
121021 TTGGGCCGTTTGTAATTGGGCCATTTGTAC
1 TTGGGCCGTTTGTAATTGGGCCATTTGTAC
121051 TT
1 TT
121053 TGTTTTGGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.13, C:0.16, G:0.27, T:0.44
Consensus pattern (30 bp):
TTGGGCCGTTTGTAATTGGGCCATTTGTAC
Found at i:121102 original size:17 final size:16
Alignment explanation
Indices: 121080--121164 Score: 91
Period size: 17 Copynumber: 5.1 Consensus size: 16
121070 TTGGACTTTC
*
121080 TAAATTTAATTTTATAA
1 TAAATTTAATTTCA-AA
121097 TAAATTTAAATTTCAAA
1 TAAATTT-AATTTCAAA
121114 TAAATTTAAATTTCAAA
1 TAAATTT-AATTTCAAA
*
121131 TAAACTTAAATTT-AAA
1 TAAA-TTTAATTTCAAA
* *
121147 TAAATTCAATTTCCAA
1 TAAATTTAATTTCAAA
121163 TA
1 TA
121165 GGTCCAGACA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
15 7 0.11
16 11 0.18
17 35 0.57
18 8 0.13
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATTTAATTTCAAA
Found at i:121118 original size:34 final size:32
Alignment explanation
Indices: 121080--121164 Score: 107
Period size: 34 Copynumber: 2.6 Consensus size: 32
121070 TTGGACTTTC
* *
121080 TAAATTTAATTTTATAATAAATTTAAATTTCAAA
1 TAAATTTAATTTCA-AATAAACTTAAATTT-AAA
121114 TAAATTTAAATTTCAAATAAACTTAAATTTAAA
1 TAAATTT-AATTTCAAATAAACTTAAATTTAAA
* *
121147 TAAATTCAATTTCCAATA
1 TAAATTTAATTTCAAATA
121165 GGTCCAGACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
32 10 0.22
33 9 0.20
34 21 0.46
35 6 0.13
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (32 bp):
TAAATTTAATTTCAAATAAACTTAAATTTAAA
Found at i:121164 original size:16 final size:17
Alignment explanation
Indices: 121080--121152 Score: 105
Period size: 17 Copynumber: 4.4 Consensus size: 17
121070 TTGGACTTTC
*
121080 TAAATTT-AATTTTATAA
1 TAAATTTAAATTTCA-AA
121097 TAAATTTAAATTTCAAA
1 TAAATTTAAATTTCAAA
121114 TAAATTTAAATTTCAAA
1 TAAATTTAAATTTCAAA
*
121131 TAAACTTAAATTT-AAA
1 TAAATTTAAATTTCAAA
121147 TAAATT
1 TAAATT
121153 CAATTTCCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.15
17 38 0.73
18 6 0.12
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTTAAATTTCAAA
Found at i:121868 original size:198 final size:194
Alignment explanation
Indices: 121595--122180 Score: 633
Period size: 204 Copynumber: 2.9 Consensus size: 194
121585 GTACGAGTTT
* * *
121595 GTTTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGA-C-TGCATCGTTTCTTTCAATTCGCTT
1 GTTTGGGTCTTCTTCTCAGT-GCTCATCAGGAAGATGACCATGC-T-GTTTGTTTCAATTCGCTT
* *
121658 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTTAGTATCTCATCAAGAAATTAATCAT
63 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAACTAA-CAT
* * *
121723 TTTATTGCTTCAACTTGC-C-TCTCAATCAAGAAGCTGGGGTTCGAAGATTTTGCTCATTTTGAG
127 TTTATCGCTTCAACCTGCTCTTCTC-ATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACTTTGAG
121786 CCTC
191 CCTC
*
121790 GTTTGGGTCCTCTTCTCAGTGCATCATCAGGAAGATGATCACATCGCTGTTTGTTTCAATTCGCT
1 GTTTGGGTCTTCTTCTCAGTGC-TCATCAGGAAGATGA-C-CAT-GCTGTTTGTTTCAATTCGCT
* * * * *
121855 CCTCTGTATCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCT
62 TCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAACTAACAT
* *
121920 TTTATCGCTTCGACCTGCTTCTTAGTGTCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTCACT
127 TTTATCGCTTCAACCTGC-TC----T-TCTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACT
121985 TTGAGCCTC
186 TTGAGCCTC
* * * *
121994 GTTTGGGTCTTCTTCTCAGTGTCTCATCAGGAAGATGACCGTGTTATTTGTTTCAACTCGCTTCT
1 GTTTGGGTCTTCTTCTCAGTG-CTCATCAGGAAGATGACCATGCTGTTTGTTTCAATTCGCTTCT
* ** * * * ** *
122059 CTGTATCTCATCAGGAAGGCGAATTTGGTTGACTGCTCAGTTTCTCATCAGGAAGTTAAC-CTTT
65 CTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAACTAACATTTT
* * * * *
122123 ATTGTTTCGACCTGCTTCTCAATGTCTCATCAAGGAGCTGGGGTTCGAAGGTTTTGCT
130 ATCGCTTCAACCTG---CTC--T-TCTCATCAAGAAGCTGGGGTTCGAAGATTTTGCT
122181 TGCTTTGTGG
Statistics
Matches: 339, Mismatches: 34, Indels: 31
0.84 0.08 0.08
Matches are distributed among these distances:
194 1 0.00
195 33 0.10
197 17 0.05
198 73 0.22
199 3 0.01
200 51 0.15
201 74 0.22
202 4 0.01
203 2 0.01
204 76 0.22
205 5 0.01
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (194 bp):
GTTTGGGTCTTCTTCTCAGTGCTCATCAGGAAGATGACCATGCTGTTTGTTTCAATTCGCTTCTC
TGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAAGAAACTAACATTTTA
TCGCTTCAACCTGCTCTTCTCATCAAGAAGCTGGGGTTCGAAGATTTTGCTCACTTTGAGCCTC
Done.