Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010463.1 Kokia drynarioides strain JFW-HI SEQ_125361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:5977 original size:18 final size:19
Alignment explanation
Indices: 5954--5996 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
5944 AAAATATTTT
*
5954 TTAAAAATT-TAAAAATTA
1 TTAAAAATTATAAAAAATA
5972 TT-AAAATTATAAAAAATA
1 TTAAAAATTATAAAAAATA
5990 TTAAAAA
1 TTAAAAA
5997 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 12 0.55
19 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAAAAATTATAAAAAATA
Found at i:5996 original size:9 final size:9
Alignment explanation
Indices: 5954--5996 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
5944 AAAATATTTT
5954 TTAAAAAT-
1 TTAAAAATA
5962 TTAAAAATTA
1 TTAAAAA-TA
*
5972 TTAAAATTA
1 TTAAAAATA
*
5981 TAAAAAATA
1 TTAAAAATA
5990 TTAAAAA
1 TTAAAAA
5997 ATAATTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 7 0.24
9 16 0.55
10 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TTAAAAATA
Found at i:6003 original size:11 final size:10
Alignment explanation
Indices: 5956--6004 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 10
5946 AATATTTTTT
5956 AAAAAT-TTA
1 AAAAATATTA
*
5965 AAAATTATT-
1 AAAAATATTA
*
5974 AAAATTA-TA
1 AAAAATATTA
5983 AAAAATATTA
1 AAAAATATTA
5993 AAAAATAATTA
1 AAAAAT-ATTA
6004 A
1 A
6005 TTATTAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 1 0.03
9 18 0.53
10 10 0.29
11 5 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAAATATTA
Found at i:12618 original size:15 final size:15
Alignment explanation
Indices: 12563--12624 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
12553 TTCTTTTTGA
12563 TTTAATTT-T-TTTC
1 TTTAATTTCTATTTC
12576 TTATATATTTCTTAATTTC
1 TT-TA-ATTTC-T-ATTTC
12595 TTTAATTTCTATTT-
1 TTTAATTTCTATTTC
12609 TTTAACTTTCT-TTTC
1 TTTAA-TTTCTATTTC
12624 T
1 T
12625 CACCTTTTCC
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 2 0.05
14 10 0.24
15 14 0.34
16 1 0.02
17 6 0.15
18 2 0.05
19 6 0.15
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTAATTTCTATTTC
Found at i:12907 original size:44 final size:44
Alignment explanation
Indices: 12842--12930 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
12832 TTTTAAGGAC
12842 AAACAAATGATGAAAACATTAGTTAAGAACATGATATGGAATAT
1 AAACAAATGATGAAAACATTAGTTAAGAACATGATATGGAATAT
* *
12886 AAACAAATGATGATGAA-ATTAGTTAAGAAGATGATATGGAATAT
1 AAACAAATGATGA-AAACATTAGTTAAGAACATGATATGGAATAT
12930 A
1 A
12931 CGTAAAATGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 40 0.95
45 2 0.05
ACGTcount: A:0.52, C:0.04, G:0.18, T:0.26
Consensus pattern (44 bp):
AAACAAATGATGAAAACATTAGTTAAGAACATGATATGGAATAT
Found at i:14037 original size:3 final size:3
Alignment explanation
Indices: 14029--14057 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14019 GGACCACTTC
14029 CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
14058 ATCTCCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:17291 original size:30 final size:30
Alignment explanation
Indices: 17238--17297 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
17228 TCTGGAAGCC
* * *
17238 ACTTTTGTTTTAGCAATTGCTGATATAATG
1 ACTTCTGTTTTAGCAATTCCTGATAAAATG
**
17268 ACTTCTGTTTTAGCTGTTCCTGATAAAATG
1 ACTTCTGTTTTAGCAATTCCTGATAAAATG
17298 CTTTTGGGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (30 bp):
ACTTCTGTTTTAGCAATTCCTGATAAAATG
Found at i:19193 original size:17 final size:17
Alignment explanation
Indices: 19171--19205 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
19161 GAGTTATAAT
*
19171 TTTTAATAATTGTTTAA
1 TTTTAAGAATTGTTTAA
*
19188 TTTTAAGAATTTTTTAA
1 TTTTAAGAATTGTTTAA
19205 T
1 T
19206 AATTTATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTAAGAATTGTTTAA
Found at i:26128 original size:31 final size:29
Alignment explanation
Indices: 26093--26157 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
26083 ATTAATTTAT
26093 AATTTCATCATTTTTGAAGGGGCTAAAGGGA
1 AATTTCATCATTTTT--AGGGGCTAAAGGGA
** *
26124 AATTTTTTCATTTTTAGGGGCTAAAGTGA
1 AATTTCATCATTTTTAGGGGCTAAAGGGA
26153 AATTT
1 AATTT
26158 TTCATATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 18 0.58
31 13 0.42
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (29 bp):
AATTTCATCATTTTTAGGGGCTAAAGGGA
Found at i:26154 original size:29 final size:30
Alignment explanation
Indices: 26100--26159 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
26090 TATAATTTCA
26100 TCATTTTTGAAGGGGCTAAAGGGAAATTTTT
1 TCATTTTT-AAGGGGCTAAAGGGAAATTTTT
*
26131 TCATTTTT-AGGGGCTAAAGTGAAATTTTT
1 TCATTTTTAAGGGGCTAAAGGGAAATTTTT
26160 CATATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 20 0.71
31 8 0.29
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (30 bp):
TCATTTTTAAGGGGCTAAAGGGAAATTTTT
Found at i:30174 original size:75 final size:75
Alignment explanation
Indices: 30051--30198 Score: 269
Period size: 75 Copynumber: 2.0 Consensus size: 75
30041 GTTGATTTCC
* *
30051 TGAAATAATAAATTGATTAAAATACGATTCCAAAAATATAATGTACATGCAGAGCTTCGGGAAAA
1 TGAAATAATAAACTGATTAAAATACGATTCCAAAAATATAATGAACATGCAGAGCTTCGGGAAAA
30116 CAAATTTAGT
66 CAAATTTAGT
*
30126 TGAAATAATAAACTGATTAAAATACGATTCTAAAAATATAATGAACATGCAGAGCTTCGGGAAAA
1 TGAAATAATAAACTGATTAAAATACGATTCCAAAAATATAATGAACATGCAGAGCTTCGGGAAAA
30191 CAAATTTA
66 CAAATTTA
30199 ACTTTGTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (75 bp):
TGAAATAATAAACTGATTAAAATACGATTCCAAAAATATAATGAACATGCAGAGCTTCGGGAAAA
CAAATTTAGT
Found at i:43560 original size:22 final size:22
Alignment explanation
Indices: 43535--43576 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
43525 CAACAAAAAT
43535 ATTGT-TGAAGAAAAGAAAAACA
1 ATTGTCTGAA-AAAAGAAAAACA
*
43557 ATTGTCTTAAAAAAGAAAAA
1 ATTGTCTGAAAAAAGAAAAA
43577 GAAAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (22 bp):
ATTGTCTGAAAAAAGAAAAACA
Found at i:43577 original size:6 final size:6
Alignment explanation
Indices: 43566--43597 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
43556 AATTGTCTTA
43566 AAAAAG AAAAAG AAAAAG -AAAAG -AAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
43598 TTGTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:55614 original size:24 final size:25
Alignment explanation
Indices: 55584--55635 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
55574 TTTTTTTCAT
55584 AAAAA-TTTATTACTATAAATATAA
1 AAAAATTTTATTACTATAAATATAA
55608 AAAAATTTTATTACTATAAATATAA
1 AAAAATTTTATTACTATAAATATAA
55633 AAA
1 AAA
55636 TTTGACTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (25 bp):
AAAAATTTTATTACTATAAATATAA
Found at i:62235 original size:27 final size:28
Alignment explanation
Indices: 62186--62247 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
62176 CCGAATTGAG
* * *
62186 TTATATTTTTATTTAATATATAATTAATT
1 TTATATTTTTATATAATAAATAAAT-ATT
62215 TTAT-TTTTTATATAA-AAATAAATATT
1 TTATATTTTTATATAATAAATAAATATT
62241 TTATATT
1 TTATATT
62248 GAAAATAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 7 0.24
27 8 0.28
28 10 0.34
29 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTATATTTTTATATAATAAATAAATATT
Found at i:65636 original size:34 final size:34
Alignment explanation
Indices: 65593--65660 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
65583 TACCAAAGTA
*
65593 AGCTTCAAACATACGTAAATGTGATCCTTTGTTC
1 AGCTTCAAACATACATAAATGTGATCCTTTGTTC
65627 AGCTTCAAACATACATAAATGTGATCCTTTGTTC
1 AGCTTCAAACATACATAAATGTGATCCTTTGTTC
65661 GGTTTGCAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (34 bp):
AGCTTCAAACATACATAAATGTGATCCTTTGTTC
Found at i:67583 original size:29 final size:28
Alignment explanation
Indices: 67424--67753 Score: 195
Period size: 30 Copynumber: 11.2 Consensus size: 28
67414 TCAAAATTGA
**
67424 AATTTTTGGAAATTTGAGGGTGAAAATGGT
1 AATTTTTGGATGTTTGAGGGT-AAAAT-GT
* *
67454 AATTTTTGGTTGTTTGGGGGT-AAATGGT
1 AATTTTTGGATGTTTGAGGGTAAAAT-GT
* *
67482 AATTTTTGGATGTTCGTGGG-AAAATGT
1 AATTTTTGGATGTTTGAGGGTAAAATGT
* * * *
67509 AATTTTAGAGAAGTTCGGGGGTCAAAATGT
1 AATTTTTG-GATGTTTGAGGGT-AAAATGT
* * *
67539 AATTATTGAAAAGTTTG-GGAGTAAAATGGT
1 AATTTTTG-GATGTTTGAGG-GTAAAAT-GT
* *
67569 AATTTTTGGATGTTTGAGGTTTAAATCGT
1 AATTTTTGGATGTTTGAGGGTAAAAT-GT
**
67598 AATTTTTGGATGTTCATG-GGAAAAAATGT
1 AATTTTTGGATGTT--TGAGGGTAAAATGT
***
67627 AATTTTAAAAATGTTT-AGGGTTAAAATGGT
1 AATTTT-TGGATGTTTGAGGG-TAAAAT-GT
* *
67657 AAATTTTGGATGTTCGAGGGTAAAAATTGT
1 AATTTTTGGATGTTTGAGGGT-AAAA-TGT
* *
67687 AATTTTGGAGAAG-TTGAGGGGTAAAAATGT
1 AATTTTTG-GATGTTTGA-GGGT-AAAATGT
*
67717 AATTTTTGGAAAGTTTGAGGGTAAAAATGT
1 AATTTTTGG-ATGTTTGAGGGT-AAAATGT
*
67747 GATTTTT
1 AATTTTT
67754 TAAATAAAAT
Statistics
Matches: 241, Mismatches: 39, Indels: 40
0.75 0.12 0.12
Matches are distributed among these distances:
27 9 0.04
28 41 0.17
29 54 0.22
30 118 0.49
31 19 0.08
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (28 bp):
AATTTTTGGATGTTTGAGGGTAAAATGT
Found at i:67624 original size:59 final size:58
Alignment explanation
Indices: 67446--67726 Score: 168
Period size: 59 Copynumber: 4.8 Consensus size: 58
67436 TTTGAGGGTG
* * * * *
67446 AAAATGGTAATTTTTGGTTGTTTGGGGGT-AAATGGTAATTTTTGGATGTTCGTGGG--
1 AAAAT-GTAATTTTAGGATGTTTGAGGTTAAAATGGTAATTTTTGGATGTTCATGGGAA
* * * * * * * *
67502 AAAATGTAATTTTAGAGAAGTTCGGGGGTCAAAAT-GTAATTATTGAAAAGTT--TGGGAGT
1 AAAATGTAATTTTAG-GATGTT-TGAGGTTAAAATGGTAATTTTTG-GATGTTCATGGGA-A
* * *
67561 AAAATGGTAATTTTTGGATGTTTGAGGTTTAAATCGTAATTTTTGGATGTTCATGGGAA
1 AAAAT-GTAATTTTAGGATGTTTGAGGTTAAAATGGTAATTTTTGGATGTTCATGGGAA
** *
67620 AAAATGTAATTTTAAAAATGTTT-AGGGTTAAAATGGTAAATTTTGGATGTTCGA-GGGTAA
1 AAAATGTAATTTT-AGGATGTTTGA-GGTTAAAATGGTAATTTTTGGATGTTC-ATGGG-AA
* * * *
67680 AAATTGTAATTTTGGAGAAG-TTGAGGGGTAAAAAT-GTAATTTTTGGA
1 AAAATGTAATTTTAG-GATGTTTGA--GGTTAAAATGGTAATTTTTGGA
67727 AAGTTTGAGG
Statistics
Matches: 175, Mismatches: 32, Indels: 32
0.73 0.13 0.13
Matches are distributed among these distances:
55 9 0.05
56 13 0.07
57 13 0.07
58 29 0.17
59 59 0.34
60 43 0.25
61 9 0.05
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.38
Consensus pattern (58 bp):
AAAATGTAATTTTAGGATGTTTGAGGTTAAAATGGTAATTTTTGGATGTTCATGGGAA
Found at i:67691 original size:60 final size:59
Alignment explanation
Indices: 67578--67752 Score: 169
Period size: 59 Copynumber: 2.9 Consensus size: 59
67568 TAATTTTTGG
* *
67578 ATGTTT-GAGGTTTAAATCGTAATTTTTGGATGTTC-ATGGGAAAAAATGTAATTTT-AAAA
1 ATGTTTAG-GGTTAAAAT-GTAATTTTTGGATGTTCGA-GGGTAAAAATGTAATTTTGAAAA
* * *
67637 ATGTTTAGGGTTAAAATGGTAAATTTTGGATGTTCGAGGGTAAAAATTGTAATTTTGGAGA
1 ATGTTTAGGGTTAAAAT-GTAATTTTTGGATGTTCGAGGGTAAAAA-TGTAATTTTGAAAA
* * * * *
67698 A-GTTGAGGGGTAAAAATGTAATTTTTGGAAAGTTTGAGGGTAAAAATGTGATTTT
1 ATGTTTA-GGGTTAAAATGTAATTTTTGG-ATGTTCGAGGGTAAAAATGTAATTTT
67753 TTAAATAAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
59 38 0.39
60 33 0.34
61 27 0.28
ACGTcount: A:0.34, C:0.02, G:0.26, T:0.38
Consensus pattern (59 bp):
ATGTTTAGGGTTAAAATGTAATTTTTGGATGTTCGAGGGTAAAAATGTAATTTTGAAAA
Found at i:67754 original size:31 final size:31
Alignment explanation
Indices: 67672--67754 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
67662 TTGGATGTTC
*
67672 GAGGGTAAAAAT-TG-TAATTTTGGAGAAGTT
1 GAGGGTAAAAATGTGAT-TTTTTGGAGAAGTT
*
67702 GAGGGGTAAAAATGT-AATTTTTGGA-AAGTTT
1 GA-GGGTAAAAATGTGATTTTTTGGAGAAG-TT
67733 GAGGGTAAAAATGTGATTTTTT
1 GAGGGTAAAAATGTGATTTTTT
67755 AAATAAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
30 17 0.38
31 27 0.60
32 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.36
Consensus pattern (31 bp):
GAGGGTAAAAATGTGATTTTTTGGAGAAGTT
Found at i:73411 original size:24 final size:23
Alignment explanation
Indices: 73368--73412 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
73358 TCAAAATGAA
*
73368 AAAATATATATTAAATTGTAAGT
1 AAAATATATATTAAAATGTAAGT
73391 AAAATGATAT-TTAAACATGTAA
1 AAAAT-ATATATTAAA-ATGTAA
73413 ATACATCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (23 bp):
AAAATATATATTAAAATGTAAGT
Found at i:89423 original size:24 final size:24
Alignment explanation
Indices: 89396--89470 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
89386 AATTTGACTC
* *
89396 AAACAACTAAATAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
*
89420 AAACAAATAAACAGAGTTTAATTA
1 AAACAAATAAACAGAGTTTAATTG
* *
89444 AAACAAATAAACAGAGTTCAACTG
1 AAACAAATAAACAGAGTTTAATTG
89468 AAA
1 AAA
89471 GATTATTTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.23
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:97164 original size:20 final size:19
Alignment explanation
Indices: 97141--97186 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
97131 TTCAAAACAG
*
97141 AAAACAATAAATAAAAATAT
1 AAAACAATAAAT-AAAATAC
* *
97161 AAAACGATTAATAAAATAC
1 AAAACAATAAATAAAATAC
97180 AAAACAA
1 AAAACAA
97187 ATTAAAAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (19 bp):
AAAACAATAAATAAAATAC
Found at i:97190 original size:20 final size:20
Alignment explanation
Indices: 97141--97191 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
97131 TTCAAAACAG
* *
97141 AAAACAATAAATAAAAATAT
1 AAAACAATTAATAAAAATAC
*
97161 AAAACGATTAAT-AAAATAC
1 AAAACAATTAATAAAAATAC
97180 AAAACAAATTAA
1 AAAAC-AATTAA
97192 AAGGAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAACAATTAATAAAAATAC
Done.