genome.fa.s10465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010465.1 Kokia drynarioides strain JFW-HI SEQ_125363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78396

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--45	12	2.6	12	94	5	53	73	0	0	26	0.84
2582--2693	15	7.4	14	84	11	116	78	0	21	0	0.75
2582--2693	7	14.7	7	81	13	116	78	0	21	0	0.75
4135--4310	40	4.3	40	76	11	158	34	25	13	26	1.93
4040--4287	124	1.9	129	81	7	301	35	24	14	26	1.94
4314--4380	35	1.9	35	90	3	109	26	20	17	34	1.96
4068--4349	124	2.3	124	77	10	279	33	24	15	26	1.95
4371--4673	45	6.6	45	84	4	214	32	24	17	25	1.96
4371--4688	46	7.0	45	84	2	375	32	24	17	25	1.96
4371--4689	91	3.5	90	83	3	381	32	24	17	25	1.96
6168--6257	30	3.1	29	83	10	96	25	8	1	64	1.29
6150--6257	30	3.7	30	79	9	93	25	9	1	62	1.35
6504--6563	24	2.5	24	83	0	66	30	10	10	50	1.69
14871--14914	19	2.3	19	92	0	70	47	11	22	18	1.80
16650--16714	24	2.7	24	100	0	130	21	12	9	56	1.63
16845--16901	24	2.5	23	77	8	62	14	5	22	57	1.56
17008--17032	8	3.1	8	100	0	50	24	24	0	52	1.48
18420--18470	26	2.0	26	88	7	77	41	9	29	19	1.84
20277--20494	86	2.5	86	88	2	305	34	14	11	38	1.83
24953--25007	26	2.1	26	100	0	110	43	7	10	38	1.68
26284--26331	25	2.0	25	84	15	66	37	0	2	60	1.09
32835--33519	301	2.3	298	80	4	765	39	10	8	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40569--40625	29	2.0	29	82	6	71	45	14	17	22	1.84
40709--40830	64	1.9	64	91	0	199	21	14	22	40	1.90
41269--41389	53	2.3	53	85	0	152	30	38	15	15	1.89
41340--41421	41	2.0	42	90	4	132	31	41	13	13	1.83
41341--41435	41	2.3	41	87	3	129	28	41	13	16	1.87
42537--42579	20	2.1	21	86	4	61	32	2	18	46	1.62
42839--43109	89	3.1	88	85	3	348	30	11	20	37	1.88
46365--46456	12	7.9	11	74	6	67	70	19	1	8	1.19
46365--46459	36	2.7	35	83	4	113	70	20	1	8	1.19
46392--46456	22	3.0	21	84	10	69	73	16	0	9	1.07
46419--46501	22	3.8	22	80	3	96	67	24	2	6	1.25
46442--46515	22	3.4	22	68	22	57	63	27	5	4	1.34
47237--47357	57	2.1	56	82	7	145	55	0	3	41	1.16
47274--47405	67	1.9	68	86	6	187	58	0	1	39	1.13
50497--50831	29	11.4	29	72	11	141	34	24	2	38	1.70
50636--50805	89	1.9	90	82	3	218	35	23	2	38	1.68
50883--50909	12	2.2	12	100	0	54	7	11	0	81	0.87
61606--61635	16	1.9	16	93	6	53	60	3	16	20	1.50
71545--71714	76	2.3	75	85	1	223	40	22	15	21	1.90
71405--71928	283	1.9	283	87	3	777	38	19	19	22	1.94
71621--72066	209	2.1	207	88	4	650	37	18	20	23	1.94
73580--73812	30	7.9	28	74	9	110	33	23	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73591--73940	59	5.9	59	74	12	245	34	22	4	38	1.74
73591--73860	89	3.0	89	80	4	287	33	22	4	39	1.74
77311--77392	28	3.0	28	82	12	98	35	24	14	25	1.94
77313--77465	55	2.8	55	85	3	191	39	22	13	23	1.90
77341--77465	27	4.5	28	84	4	164	40	22	12	24	1.88

Tables:   1

The End!