genome.fa.s10467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010467.1 Kokia drynarioides strain JFW-HI SEQ_125365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75571

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009--1095	17	5.1	17	80	2	93	34	2	4	58	1.31
1690--1724	15	2.3	15	95	0	61	65	0	0	34	0.93
1704--1735	11	2.8	12	90	9	50	62	3	0	34	1.11
1690--1742	15	3.5	15	81	2	52	66	1	0	32	1.03
2759--3060	30	10.2	29	72	10	129	37	26	3	32	1.74
2759--2886	60	2.1	60	82	2	150	37	26	3	32	1.72
2898--3077	59	3.1	59	80	12	196	36	27	4	31	1.77
2992--3234	58	4.2	58	75	9	185	36	26	4	32	1.78
2929--3163	29	8.1	29	76	12	207	37	27	4	31	1.76
2929--3234	116	2.6	115	77	9	264	36	26	4	32	1.77
3189--3254	30	2.2	30	83	5	80	34	21	6	37	1.78
5992--6025	6	5.8	6	89	3	52	38	8	0	52	1.33
5992--6025	18	1.9	17	94	5	59	38	8	0	52	1.33
7369--7469	27	3.5	28	86	8	132	67	0	7	24	1.17
7367--7493	56	2.2	58	81	10	147	63	2	8	25	1.35
9219--9698	49	9.8	49	82	3	468	20	25	16	38	1.92
13910--13950	12	3.5	12	78	15	50	75	0	7	17	1.02
22050--22119	23	2.9	22	81	18	61	10	20	7	62	1.49
24694--24752	23	2.4	24	78	16	59	69	5	3	22	1.23
29063--29127	22	3.0	22	84	4	69	10	24	20	44	1.83
31479--31513	18	1.9	18	94	0	61	77	0	22	0	0.78
31544--31596	14	3.6	16	73	19	53	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31536--31591	29	2.0	26	83	10	67	39	0	1	58	1.08
32716--32772	18	2.9	19	84	7	62	40	1	3	54	1.28
32938--32972	9	3.9	9	84	0	52	42	17	11	28	1.83
32937--32971	18	1.9	18	100	0	70	40	20	11	28	1.87
40512--40690	91	2.0	90	90	5	281	29	8	10	51	1.67
41019--41044	2	13.0	2	100	0	52	50	0	0	50	1.00
41668--41735	31	2.2	31	100	0	136	25	0	8	66	1.20
41746--41871	31	4.1	30	75	17	100	41	8	11	38	1.73
41746--41871	62	2.0	61	80	10	141	41	8	11	38	1.73
45809--45855	21	2.2	21	84	0	58	34	25	12	27	1.92
56749--56787	19	2.1	19	100	0	78	41	12	5	41	1.65
57970--58052	43	1.9	43	100	0	166	32	14	14	38	1.86
61097--61955	49	17.5	49	69	10	513	38	16	25	18	1.92
61162--61619	98	4.7	99	85	4	570	39	16	25	18	1.91
61158--61605	197	2.3	196	89	0	673	39	16	25	18	1.92
61627--62012	196	2.0	195	81	2	452	36	17	26	18	1.93
72860--72899	19	2.1	19	95	0	71	55	20	15	10	1.68
75542--75571	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!