Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010477.1 Kokia drynarioides strain JFW-HI SEQ_125378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14145
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31


Found at i:10411 original size:14 final size:12

Alignment explanation


    Indices: 10361--10403  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

      10351 TACAACTCAA

                        
      10361 TATTTT-TCTTT
          1 TATTTTATCTTT

                     *   
      10372 TA-TTTACTATTT
          1 TATTTTA-TCTTT

                        
      10384 TATTTTATCTTT
          1 TATTTTATCTTT

                    
      10396 TATTTTAT
          1 TATTTTAT

      10404 GTCTTTTACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  10    3  0.11
  11    2  0.07
  12   18  0.67
  13    4  0.15

ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74


Consensus pattern (12 bp):   
TATTTTATCTTT
Done.