genome.fa.s10480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010480.1 Kokia drynarioides strain JFW-HI SEQ_125382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  287878

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167--215	17	3.0	16	85	5	62	4	14	2	79	0.97
215--257	2	21.5	2	100	0	86	48	0	0	51	1.00
8998--9039	6	7.0	6	100	0	84	50	50	0	0	1.00
14995--15045	16	3.2	17	78	8	54	49	0	1	49	1.12
15536--15579	8	5.0	9	81	15	56	29	0	2	68	1.02
15536--15579	18	2.5	18	85	3	63	29	0	2	68	1.02
18326--18364	20	1.9	21	84	5	53	56	0	5	38	1.22
19966--20117	74	2.1	73	84	1	196	19	16	16	47	1.83
39732--39779	25	1.9	25	91	0	78	47	2	6	43	1.40
45322--45376	21	2.6	21	97	0	101	34	9	30	25	1.87
49990--50029	18	2.2	19	86	8	57	20	17	0	62	1.33
51781--51825	24	1.9	23	86	4	63	60	0	4	35	1.17
60152--60225	34	2.2	34	87	0	103	35	8	17	39	1.79
64672--64701	3	10.0	3	92	0	51	63	0	33	3	1.11
68545--68584	22	1.9	22	85	10	57	32	12	17	37	1.87
69799--69828	3	10.0	3	100	0	60	66	0	0	33	0.92
72962--73016	7	7.9	7	91	0	74	21	14	49	14	1.79
72960--73020	14	4.4	14	87	0	95	24	14	47	13	1.80
72953--73022	21	3.3	21	79	0	68	30	14	44	11	1.80
78830--78864	17	2.1	17	89	5	54	60	8	0	31	1.27
95713--95769	30	1.9	30	96	0	105	43	14	22	19	1.86
104398--104445	20	2.4	21	86	6	73	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108479--108518	20	1.9	20	85	10	53	22	0	20	57	1.41
117270--117314	21	2.0	23	87	8	67	28	0	2	68	1.01
117271--117314	23	1.9	23	85	0	61	27	0	2	70	0.99
124047--124091	17	2.6	17	75	0	54	26	2	2	68	1.12
124512--124549	21	1.9	20	89	10	60	50	0	0	50	1.00
132949--132990	17	2.5	17	77	11	50	73	9	0	16	1.08
133042--133255	30	7.3	28	73	14	146	36	4	20	38	1.73
133042--133255	88	2.4	89	77	3	243	36	4	20	38	1.73
133201--133265	30	2.2	30	86	2	87	38	4	15	41	1.68
134485--134682	40	5.0	39	78	6	202	25	18	24	31	1.97
134485--134673	79	2.4	79	87	0	279	25	19	24	30	1.98
134779--134892	40	2.9	40	78	8	126	25	16	24	33	1.96
134564--135001	216	2.0	216	87	0	626	26	19	20	34	1.96
134957--135079	50	2.5	50	82	0	138	21	24	19	34	1.97
139795--139870	31	2.5	30	82	6	82	39	7	17	35	1.78
141812--141847	16	2.1	18	90	10	58	63	13	0	22	1.29
141908--142124	30	7.3	28	76	12	166	36	5	19	38	1.74
141920--142054	59	2.3	60	84	6	168	40	5	16	37	1.73
141909--142124	60	3.6	58	74	12	188	37	5	18	38	1.73
142865--142966	51	2.0	50	96	1	186	19	22	42	14	1.88
143394--143431	15	2.4	16	83	16	53	50	5	2	42	1.39
172475--172563	43	2.1	43	93	0	151	30	23	5	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183540--183577	18	2.1	18	100	0	76	36	15	5	42	1.70
186912--187077	45	3.7	44	78	4	154	33	15	24	25	1.95
187732--187782	25	2.0	25	84	0	66	21	27	39	11	1.88
189272--189331	26	2.3	26	82	0	75	30	23	16	30	1.96
189349--189420	19	3.8	19	94	0	117	20	27	20	30	1.98
193977--194017	18	2.2	18	91	4	64	51	4	0	43	1.23
199721--199762	17	2.5	17	100	0	84	42	0	0	57	0.99
199725--199770	17	2.9	16	90	9	69	47	0	0	52	1.00
199818--199904	40	2.2	40	89	4	131	52	5	1	40	1.33
211507--211598	45	2.0	45	97	0	175	33	13	22	30	1.92
223010--223059	19	2.6	19	83	0	73	38	28	12	22	1.89
223475--223603	43	3.0	43	98	0	249	58	15	4	21	1.56
238322--238355	17	2.1	17	88	5	52	44	5	20	29	1.75
241704--241728	12	2.1	12	100	0	50	76	0	0	24	0.80
241698--241750	22	2.5	21	75	6	61	69	0	3	26	1.05
244760--244786	5	5.4	5	100	0	54	81	0	18	0	0.69
253806--253834	14	2.1	14	100	0	58	37	13	27	20	1.91
262130--262336	108	1.9	108	86	2	290	34	11	14	39	1.82
263120--263157	3	12.7	3	100	0	76	0	31	0	68	0.90
269041--269081	22	1.9	22	90	5	66	26	0	7	65	1.18
277075--277162	44	2.0	45	82	6	108	51	1	20	27	1.55
278957--279007	6	8.5	6	86	0	66	49	0	29	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281436--281474	17	2.3	17	90	0	60	15	12	25	46	1.81
286655--287028	185	2.0	185	97	0	712	46	13	12	28	1.79
287543--287624	17	4.8	17	80	5	94	45	2	3	48	1.33
287577--287631	6	9.3	6	74	18	53	47	0	3	49	1.19
287542--287624	34	2.4	34	84	4	105	45	2	3	48	1.33
287595--287639	24	1.9	23	90	4	72	48	0	0	51	1.00

Tables:   1

The End!