Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010481.1 Kokia drynarioides strain JFW-HI SEQ_125384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32


Found at i:511 original size:21 final size:21

Alignment explanation


    Indices: 485--527  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        475 TAGGGTCCAT

                         *       
        485 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

                  *              
        506 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

             
        527 T
          1 T

        528 CGCGATGAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTA

Found at i:652 original size:45 final size:45

Alignment explanation


    Indices: 537--658  Score: 181
    Period size: 45  Copynumber: 2.7  Consensus size: 45

        527 TCGCGATGAA

                      *  *           **                  
        537 TCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTACGGTGGC
          1 TCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGGTGGC

                    *     *                      *       
        582 TCGTCAAATTGAGGTTGATATCCTTGGCTTGAGTATTGCGGTGGC
          1 TCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGGTGGC

                                            
        627 TCGTCAAACTGAGGCTGATATCCTTGGCTTGA
          1 TCGTCAAACTGAGGCTGATATCCTTGGCTTGA

        659 TGAGCTATGC


Statistics
Matches: 68,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   68  1.00

ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33


Consensus pattern (45 bp):   
TCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGGTGGC
Done.