Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010482.1 Kokia drynarioides strain JFW-HI SEQ_125385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8712
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:1746 original size:19 final size:19

Alignment explanation


    Indices: 1722--1759  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1712 GAGAATGAAA

                  *            
       1722 AAGAAAGTAGAATTTTAGT
          1 AAGAAACTAGAATTTTAGT

                               
       1741 AAGAAACTAGAATTTTAGT
          1 AAGAAACTAGAATTTTAGT

       1760 GGCAATCTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32


Consensus pattern (19 bp):   
AAGAAACTAGAATTTTAGT

Found at i:2784 original size:82 final size:82

Alignment explanation


    Indices: 2684--2849  Score: 296
    Period size: 82  Copynumber: 2.0  Consensus size: 82

       2674 CATCAATGCC

                                                            **               
       2684 AAATATAAGTACTTTAATTATCCTAGTACAATACAAATAACCATAAAGGGATCATACAATTTCCA
          1 AAATATAAGTACTTTAATTATCCTAGTACAATACAAATAACCATAAAGAAATCATACAATTTCCA

                             
       2749 AATCTATTCATGCATAG
         66 AATCTATTCATGCATAG

                                                    *     *                  
       2766 AAATATAAGTACTTTAATTATCCTAGTACAATACAAATAATCATAATGAAATCATACAATTTCCA
          1 AAATATAAGTACTTTAATTATCCTAGTACAATACAAATAACCATAAAGAAATCATACAATTTCCA

                             
       2831 AATCTATTCATGCATAG
         66 AATCTATTCATGCATAG

              
       2848 AA
          1 AA

       2850 TTGTTTAAGT


Statistics
Matches: 80,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  82   80  1.00

ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31


Consensus pattern (82 bp):   
AAATATAAGTACTTTAATTATCCTAGTACAATACAAATAACCATAAAGAAATCATACAATTTCCA
AATCTATTCATGCATAG

Found at i:7576 original size:6 final size:6

Alignment explanation


    Indices: 7565--7590  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       7555 ACTGTATACG

                                          
       7565 CTGAGC CTGAGC CTGAGC CTGAGC CT
          1 CTGAGC CTGAGC CTGAGC CTGAGC CT

       7591 AATAGGTATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.15, C:0.35, G:0.31, T:0.19


Consensus pattern (6 bp):   
CTGAGC

Done.