genome.fa.s10483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010483.1 Kokia drynarioides strain JFW-HI SEQ_125386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65977

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864--944	24	3.4	24	85	0	117	23	20	27	28	1.99
4834--5897	209	5.1	209	86	2	1325	24	20	16	39	1.92
5572--5642	37	1.9	37	91	0	115	23	22	18	35	1.96
5524--5690	85	2.0	84	89	3	255	23	23	16	36	1.94
4834--5897	417	2.5	414	84	3	1337	24	20	16	39	1.92
5910--5997	46	1.9	45	90	2	140	29	17	21	31	1.96
5910--6047	46	3.1	43	81	7	136	28	18	21	31	1.96
6087--6330	96	2.5	96	78	7	253	18	31	13	37	1.89
7213--7268	23	2.6	21	81	15	62	3	14	0	82	0.81
11135--11278	73	2.0	73	98	0	279	49	10	14	25	1.75
12654--12889	29	8.2	29	74	13	141	38	2	24	35	1.67
12679--12851	29	5.9	30	79	11	182	36	1	26	35	1.64
12679--12941	59	4.5	58	76	12	234	38	2	23	35	1.69
12679--12941	30	9.0	29	76	8	178	38	2	23	35	1.69
15396--15442	23	2.0	23	95	0	85	25	23	23	27	2.00
25629--25659	2	15.5	2	93	0	53	54	0	45	0	0.99
28996--29046	20	2.7	18	80	14	57	35	7	15	41	1.76
32341--32543	40	5.1	40	84	0	226	31	17	23	27	1.97
54061--54090	15	2.0	15	93	0	51	46	36	6	10	1.64
57856--57931	21	3.7	21	77	10	75	30	23	14	31	1.94
61663--61749	45	1.9	45	90	0	138	26	11	21	40	1.87
65294--65369	27	2.8	26	75	22	77	73	0	22	3	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65296--65369	7	11.2	6	76	20	60	74	0	21	4	0.98
65296--65362	19	3.3	20	73	19	59	74	0	22	2	0.95

Tables:   1

The End!