Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010485.1 Kokia drynarioides strain JFW-HI SEQ_125388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113830
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 11 characters in sequence are not A, C, G, or T
Found at i:4372 original size:20 final size:19
Alignment explanation
Indices: 4306--4372 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
4296 TTGTACGGGA
*
4306 TTGCACTTCGGTGCCTCTAT
1 TTGCACTTCGGTGTCTCT-T
4326 TTGCACTTCGGTGTCTCTT
1 TTGCACTTCGGTGTCTCTT
* * *
4345 CTTACACTTTGGTTTCTCTGT
1 -TTGCACTTCGGTGTCTCT-T
4366 TTGCACT
1 TTGCACT
4373 ATGGTGCCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.09, C:0.27, G:0.18, T:0.46
Consensus pattern (19 bp):
TTGCACTTCGGTGTCTCTT
Found at i:6523 original size:7 final size:7
Alignment explanation
Indices: 6503--6586 Score: 55
Period size: 7 Copynumber: 12.1 Consensus size: 7
6493 CTCGAAAAAA
6503 GTCAACG
1 GTCAACG
* *
6510 ATTAACG
1 GTCAACG
6517 GTCAACG
1 GTCAACG
6524 GTCAACG
1 GTCAACG
* *
6531 ATCAATG
1 GTCAACG
*
6538 GT-TACAG
1 GTCAAC-G
* *
6545 GTTAATG
1 GTCAACG
*
6552 ATCAACG
1 GTCAACG
*
6559 GTCAACT
1 GTCAACG
6566 GTCAACG
1 GTCAACG
*
6573 GTC-ATG
1 GTCAACG
6579 GTCAACG
1 GTCAACG
6586 G
1 G
6587 GTTCGAGTCA
Statistics
Matches: 55, Mismatches: 19, Indels: 6
0.69 0.24 0.08
Matches are distributed among these distances:
6 6 0.11
7 48 0.87
8 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (7 bp):
GTCAACG
Found at i:6529 original size:21 final size:21
Alignment explanation
Indices: 6503--6586 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
6493 CTCGAAAAAA
*
6503 GTCAACGATTAACGGTCAACG
1 GTCAACGATCAACGGTCAACG
* *
6524 GTCAACGATCAATGGT-TACAG
1 GTCAACGATCAACGGTCAAC-G
* * *
6545 GTTAATGATCAACGGTCAACT
1 GTCAACGATCAACGGTCAACG
* *
6566 GTCAACGGTC-ATGGTCAACG
1 GTCAACGATCAACGGTCAACG
6586 G
1 G
6587 GTTCGAGTCA
Statistics
Matches: 48, Mismatches: 13, Indels: 5
0.73 0.20 0.08
Matches are distributed among these distances:
20 11 0.23
21 35 0.73
22 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (21 bp):
GTCAACGATCAACGGTCAACG
Found at i:6665 original size:21 final size:19
Alignment explanation
Indices: 6639--6684 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 19
6629 TTGGTTCCAC
6639 TTGGGTTTGGGTTTGATTCAA
1 TTGGGTTTGGGTTTGATT--A
6660 TTGGGTTTGGGTTTGATTA
1 TTGGGTTTGGGTTTGATTA
6679 TTGGGT
1 TTGGGT
6685 AATTTTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 7 0.28
21 18 0.72
ACGTcount: A:0.11, C:0.02, G:0.37, T:0.50
Consensus pattern (19 bp):
TTGGGTTTGGGTTTGATTA
Found at i:7012 original size:99 final size:98
Alignment explanation
Indices: 6841--7034 Score: 370
Period size: 99 Copynumber: 2.0 Consensus size: 98
6831 TTACGAACTT
6841 CAAAAACGTTGAACAACGACGAAATAAAACAAGTAACAAAGGCCGAAAGTCCCCCTTGTTGTTTC
1 CAAAAACGTTGAACAACGACGAAATAAAACAAGTAACAAAGGCCGAAAGTCCCCCTTGTTGTTTC
6906 ACACAAACGGCGGCTGAAAGGAGGGGATTNACTC
66 ACACAAACGGCGGCTGAAAGGAGGGGATT-ACTC
*
6940 CAAAAACGTTGAACAACGACGAAATAAAACAAGTAACAAAGGTCGAAAGTCCCCCTTGTTGTTTC
1 CAAAAACGTTGAACAACGACGAAATAAAACAAGTAACAAAGGCCGAAAGTCCCCCTTGTTGTTTC
7005 ACACAAACGGCGGCTGAAAGGAGGGGATTA
66 ACACAAACGGCGGCTGAAAGGAGGGGATTA
7035 AAGGGGTGGT
Statistics
Matches: 94, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
98 1 0.01
99 93 0.99
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (98 bp):
CAAAAACGTTGAACAACGACGAAATAAAACAAGTAACAAAGGCCGAAAGTCCCCCTTGTTGTTTC
ACACAAACGGCGGCTGAAAGGAGGGGATTACTC
Found at i:12499 original size:2 final size:2
Alignment explanation
Indices: 12492--12517 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12482 CATTCACATG
12492 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
12518 AAATCTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13743 original size:27 final size:26
Alignment explanation
Indices: 13694--13744 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
13684 AAGTCAACTC
*
13694 TCAAAGTCAACGATCAACGGTCAAAG
1 TCAAAGTCAACGATCAACAGTCAAAG
* *
13720 TCAACAGTCAACTATCGACAGTCAA
1 TCAA-AGTCAACGATCAACAGTCAA
13745 TAGGTTCGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (26 bp):
TCAAAGTCAACGATCAACAGTCAAAG
Found at i:25295 original size:6 final size:6
Alignment explanation
Indices: 25284--25308 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25274 GATTTAAAAT
25284 AATAAC AATAAC AATAAC AATAAC A
1 AATAAC AATAAC AATAAC AATAAC A
25309 GGCTGCTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAC
Found at i:26837 original size:43 final size:43
Alignment explanation
Indices: 26734--27046 Score: 299
Period size: 43 Copynumber: 7.3 Consensus size: 43
26724 TTATGAGGAA
* * * * * *
26734 AAACGCTGCTATAGAACATAGTCTTTAGCGGCAC-TTTCCTAT
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* * * *
26776 AAACACCGCTTAAGAACATGATCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* * * * *
26819 AAACGCCGCTAAAAAACATGGTATTTACCGGCGCTTTTCTCAT
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* * *
26862 TAACGCCGTTAAAGAACATGGTCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* * * * ***
26905 AAAGGCCACTAAAGAACATGATCTTTAACGGCGCTTCAACCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* *
26948 AAACGCCGCTAAAGAACATGGCCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
* * * *
26991 AAATGCCGCTATAGATA-ATGTTCTTTAGCGGC-ATTTTCTCCAC
1 AAACGCCGCTAAAGA-ACATGGTCTTTAGCGGCGCTTTTC-CCAC
*
27034 AAACGCCACTAAA
1 AAACGCCGCTAAA
27047 ATTAATAGAT
Statistics
Matches: 213, Mismatches: 55, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
42 31 0.15
43 181 0.85
44 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCCCAC
Found at i:45022 original size:37 final size:37
Alignment explanation
Indices: 44981--45060 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
44971 GGACATGTTC
* * *
44981 ATGCAGCGATATTCCTAGATGCAATTGAAGAATACTT
1 ATGCAGCGATAGTACTAGATGCAATTAAAGAATACTT
* * * *
45018 ATGCAACGATAGTATTGGATGCAATTAAAGAATATTT
1 ATGCAGCGATAGTACTAGATGCAATTAAAGAATACTT
45055 ATGCAG
1 ATGCAG
45061 TGACAGTCTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (37 bp):
ATGCAGCGATAGTACTAGATGCAATTAAAGAATACTT
Found at i:46242 original size:48 final size:48
Alignment explanation
Indices: 46165--46336 Score: 254
Period size: 48 Copynumber: 3.6 Consensus size: 48
46155 TATTTATGCT
* * *
46165 TCATTAAGTGTTTTTTTTTGTTAAATGCATCTTTTTTTAATAATCTGCA
1 TCATTAAGTG-TTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
*
46214 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATTTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* *
46262 TTATTAATTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
* * *
46310 TTATTAACTGTTTTTTTTGTTAAATGC
1 TCATTAAGTGTTTTGTTTGTTAAATGC
46337 CTTGCAGTAA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 104 0.91
49 10 0.09
ACGTcount: A:0.23, C:0.09, G:0.13, T:0.55
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
Found at i:46249 original size:24 final size:24
Alignment explanation
Indices: 46222--46298 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
46212 CATCATTAAG
46222 TGTTTTGTTTGTTAAATGCATCTT
1 TGTTTTGTTTGTTAAATGCATCTT
* * ** *
46246 TGTTTAGTAAT-TTGCAT-TAT-TAAT
1 TGTTTTGT-TTGTTAAATGCATCT--T
46270 TGTTTTGTTTGTTAAATGCATCTT
1 TGTTTTGTTTGTTAAATGCATCTT
46294 TGTTT
1 TGTTT
46299 AGTAATCTGC
Statistics
Matches: 37, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
22 1 0.03
23 3 0.08
24 29 0.78
25 3 0.08
26 1 0.03
ACGTcount: A:0.19, C:0.06, G:0.16, T:0.58
Consensus pattern (24 bp):
TGTTTTGTTTGTTAAATGCATCTT
Found at i:47794 original size:34 final size:34
Alignment explanation
Indices: 47739--47808 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
47729 TGACAAATGG
* * *
47739 AAATGCAATGATAACGCAAATGT-AGTGATAATTA
1 AAATGCAATGACAAAGCAAATGTGA-TGACAATTA
*
47773 AAATGCAATGACAAAGGAAATGTGATGACAATTA
1 AAATGCAATGACAAAGCAAATGTGATGACAATTA
47807 AA
1 AA
47809 TTACAACTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.23
Consensus pattern (34 bp):
AAATGCAATGACAAAGCAAATGTGATGACAATTA
Found at i:50105 original size:16 final size:16
Alignment explanation
Indices: 50084--50114 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50074 ATAATTTGAA
50084 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
50100 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
50115 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:50943 original size:26 final size:26
Alignment explanation
Indices: 50907--50957 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
50897 TTCTGGGCAC
*
50907 AATTCTAGACACGTTCATGTAGCGAA
1 AATTCTAGACACGTTCATGCAGCGAA
*
50933 AATTCTAGACATGTTCATGCAGCGA
1 AATTCTAGACACGTTCATGCAGCGA
50958 CATTCCTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
AATTCTAGACACGTTCATGCAGCGAA
Found at i:58267 original size:37 final size:37
Alignment explanation
Indices: 58217--58292 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
58207 TGACAGCTGC
58217 AAAATTTAGATCTGGATCTGAGAATAGAGGAGGATGA
1 AAAATTTAGATCTGGATCTGAGAATAGAGGAGGATGA
58254 AAAATTTAGATCTGGATCTGAGAATAGAGGAGGATGA
1 AAAATTTAGATCTGGATCTGAGAATAGAGGAGGATGA
58291 AA
1 AA
58293 CCTGCAACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.42, C:0.05, G:0.29, T:0.24
Consensus pattern (37 bp):
AAAATTTAGATCTGGATCTGAGAATAGAGGAGGATGA
Found at i:72326 original size:18 final size:18
Alignment explanation
Indices: 72303--72338 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72293 ATACATGCAT
72303 CAACCTATTTGACTTGAG
1 CAACCTATTTGACTTGAG
*
72321 CAACCTATTTTACTTGAG
1 CAACCTATTTGACTTGAG
72339 GAAAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (18 bp):
CAACCTATTTGACTTGAG
Found at i:73733 original size:18 final size:18
Alignment explanation
Indices: 73707--73753 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
73697 GACACGCACT
*
73707 TTGTAATCACAACTTATC
1 TTGTTATCACAACTTATC
73725 TTGTTATCACAACTTATC
1 TTGTTATCACAACTTATC
73743 TTGTTATCACA
1 TTGTTATCACA
73754 TTTATTTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (18 bp):
TTGTTATCACAACTTATC
Found at i:77374 original size:25 final size:24
Alignment explanation
Indices: 77333--77383 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
77323 TTAAAACAAC
77333 TTCTTAAAAAAAACTC-AAGAGCAA
1 TTCTTAAAAAAAACTCAAAGAG-AA
*
77357 TTCTTGAAGAAAAACTCAAAGAGAA
1 TTCTT-AAAAAAAACTCAAAGAGAA
77382 TT
1 TT
77384 ATTATTAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 14 0.58
26 5 0.21
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (24 bp):
TTCTTAAAAAAAACTCAAAGAGAA
Found at i:81970 original size:32 final size:32
Alignment explanation
Indices: 81934--81999 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
81924 TAGCTGAAAT
* * * *
81934 TAATTAGTTGATTAATGTGTTTCTGGTACATG
1 TAATTAGCTGATTAATATATTTCAGGTACATG
81966 TAATTAGCTGATTAATATATTTCAGGTACATG
1 TAATTAGCTGATTAATATATTTCAGGTACATG
81998 TA
1 TA
82000 TGGATGGCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (32 bp):
TAATTAGCTGATTAATATATTTCAGGTACATG
Found at i:83350 original size:216 final size:216
Alignment explanation
Indices: 82976--84154 Score: 1372
Period size: 216 Copynumber: 5.5 Consensus size: 216
82966 TCATAAAACT
** * * * *
82976 ATGCGATTTCTTGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCACCTTGAATTCTT
1 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
* * * *
83041 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACATGTTCAGAAGTTTGTCTCAGAACC
66 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAACC
**
83106 AATAGTCAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
131 AATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
83171 ACAAACTATTTAGACCAAATG
196 ACAAACTATTTAGACCAAATG
** * ** * * * *
83192 ATGCGATTTCTTGTGCATGGAATGTTCGAAAAATTGCTTTATGGAATGGATCGTCTTGAATGCCT
1 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
*
83257 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACC
66 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAACC
* * * *
83322 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATG
131 AATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
* *
83387 AAAAACTATTTAGACCAAGTG
196 ACAAACTATTTAGACCAAATG
* * * * *
83408 ATGTGATTTCCCGAGCATGGAATGTT-TAGAAAATTACTCGAAGGAATGGATCGTCTTCAATACT
1 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * * * *
83472 TTAAGGAACAAAAGTTATAAAA-ATACTCGTAAAAGTTCGACATGTTCGAAAGTTTGTCTTAGAA
65 TTAAGGAACCAAAGTTATAAAAGA-ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAA
* * * * * *
83536 CCAATAGTGAAATAATTTTCACTTAAATAAGTTTTTAATTCAAAGACTAAAATTTGTTTTCAAAA
129 CCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAA
83601 TGACAAACTATTTAGACCAAATG
194 TGACAAACTATTTAGACCAAATG
* * * *
83624 ATG-TAGTTTCCCGAGCATGGAATGTTCGAAAAATTTCTCAAAAAGGAATGGATCATCTTCAATA
1 ATGCGA-TTTCCCGAGCATGGAATGTTCGAAAAATTGCTC--GAAGGAATGGATCATCTTGAATA
* * *
83688 CTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCTAAGA
63 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGA
* * * * *
83753 ACCAATAGAGAAACAATTCCCATGTAAATAAGTTTTTAATTCAAAGACC-AATTTTTTTTAAAAA
128 ACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTT--ACA
*
83817 AAATGACAAACTAATTAGACCAAATG
191 AAATGACAAACTATTTAGACCAAATG
* * * * *
83843 ATGTGATTTCCTGAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTT
1 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
* * *
83908 TAAGGTAA-CAAA--T-T--AA-AA---G----A--TTGACAAGTTCGAAAGTTCATCTTAGAAC
66 TAAGG-AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAAC
* * * **
83957 CAAGAGAGAAACAATTCTAACGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAAAAT
130 CAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAAT
*
84022 GACAAACTATTTAGACAAAATG
195 GACAAACTATTTAGACCAAATG
* * * * **
84044 ATTCAATTTCCCAAGCATGGAATGTTCGGAAAATTTTTCGAAGGAATGGATCATCTTGAATACTT
1 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATAC-T
* * * * * * *
84109 TTAAGGAATCGAAGTAACAAAGGATCTCGAAAAAGTTTGACAAGTT
65 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
84155 TTTAATTGAA
Statistics
Matches: 812, Mismatches: 122, Indels: 57
0.82 0.12 0.06
Matches are distributed among these distances:
201 80 0.10
202 77 0.09
203 6 0.01
204 1 0.00
207 1 0.00
208 1 0.00
211 3 0.00
212 2 0.00
214 1 0.00
215 5 0.01
216 406 0.50
217 49 0.06
218 119 0.15
219 60 0.07
220 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTAAGAACC
AATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATG
ACAAACTATTTAGACCAAATG
Found at i:84103 original size:201 final size:202
Alignment explanation
Indices: 83719--84114 Score: 510
Period size: 202 Copynumber: 2.0 Consensus size: 202
83709 AAAGAACTCA
* * * * * * *
83719 TAAAAGTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAATAGAGAAACAATTCCCATGTAAATAA
1 TAAAAGATTGACAAGTTCGAAAGTTCATCTAAGAACCAAGAGAGAAACAATTCCAACGTAAATAA
*** * * *
83784 GTTTTTAATTCAAAGACCAATTTTTTTTAAAAAAAATGACAAACTAATTAGACCAAATGATGTGA
66 GTTTTTAATTCAAAGACCAAACATGTTT-AAAAAAATGACAAACTAATTAGACAAAATGATGTAA
** * *
83849 TTTCCTGAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTC-TTTAAGG
130 TTTCCCAAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTTAAGG
83913 TAACAAAT
195 TAACAAAT
* * *
83921 TAAAAGATTGACAAGTTCGAAAGTTCATCTTAGAACCAAGAGAGAAACAATTCTAACGTAAATGA
1 TAAAAGATTGACAAGTTCGAAAGTTCATCTAAGAACCAAGAGAGAAACAATTCCAACGTAAATAA
* *
83986 GTTTTTAATTCAAAGACCAAAACATGTTT-ACAAAATGACAAACTATTTAGACAAAATGAT-TCA
66 GTTTTTAATTCAAAGACC-AAACATGTTTAAAAAAATGACAAACTAATTAGACAAAATGATGT-A
* * **
84049 ATTTCCCAAGCATGGAATGTTCGGAAAATTTTTCGAAGGAATGGATCATCTTGAATACTTTTAAG
129 ATTTCCCAAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTTAAG
84114 G
194 G
84115 AATCGAAGTA
Statistics
Matches: 165, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
200 1 0.01
201 78 0.47
202 80 0.48
203 6 0.04
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (202 bp):
TAAAAGATTGACAAGTTCGAAAGTTCATCTAAGAACCAAGAGAGAAACAATTCCAACGTAAATAA
GTTTTTAATTCAAAGACCAAACATGTTTAAAAAAATGACAAACTAATTAGACAAAATGATGTAAT
TTCCCAAGCATGGAATGCTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTTAAGGT
AACAAAT
Found at i:85460 original size:50 final size:51
Alignment explanation
Indices: 85399--85495 Score: 128
Period size: 50 Copynumber: 1.9 Consensus size: 51
85389 AACTAATGGA
*
85399 TTACTAAATGCATGAC-TTGATTTAATGATGCATA-TTAACTAA-CATGTAAG
1 TTACTAAATGCATGACATT-ATTT-ATGATGCAAACTTAACTAATCATGTAAG
* *
85449 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAACTAATCATG
1 TTACTAAATGCATGACATTATTTATGATGCAAACTTAACTAATCATG
85496 AGAGTTAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
49 9 0.22
50 26 0.63
51 6 0.15
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.38
Consensus pattern (51 bp):
TTACTAAATGCATGACATTATTTATGATGCAAACTTAACTAATCATGTAAG
Found at i:85727 original size:17 final size:17
Alignment explanation
Indices: 85696--85728 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
85686 CAAACACTTA
85696 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
85713 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
85729 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:88164 original size:216 final size:215
Alignment explanation
Indices: 87517--88378 Score: 972
Period size: 216 Copynumber: 4.0 Consensus size: 215
87507 AGATCGTATC
* * * * * *
87517 ATGGATCGTCTTCAATACTTTAAGGAATCGAAGTTATTAAAGAAATCGAAAAAGTTTGACATGTT
1 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* ** * * * * *
87582 CAGAAGTTTGTGTTAGAACCAATAGTGAAACAATTCTCATGTAAATAAGTTTTTAACTCAAAGAC
66 CAGAAGTTCGT-CCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
87647 CAAAACTTGTTTACGAAATGACAAACTATTTAGATCAAATGATGCGATTTCTTGTGCATGGAATG
130 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
*
87712 TTCGAAAAATTGCTAGAAGGA
195 TTCGAAAAATTGCTCGAAGGA
* *
87733 ATGGATCGTCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTATGACAAGTT
1 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * *** * * * *
87798 CAAAAGTTCATCCGTGACTAAGAGAGAAACGATTCTCCCGTAAATAAGCTTTTAATTCAAAGACC
66 CAGAAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * * *
87863 AAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAGTGATGCAATTTCCCGAGCATGGAATGT
131 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
* *
87928 TTGAAAAATTGCTTGAAGGA
196 TCGAAAAATTGCTCGAAGGA
* *
87948 ATGGATCGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
1 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * *
88013 CGGAAGTTCGTCCCAAAACCAATAGAGAAATAATTTTCACGTTAATAAGTTTTTAATTTAAAGAC
66 CAGAAGTTCGT-CCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
88078 CCAAACCTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTACTCGAGCATGGAATG
130 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
*
88143 TTCGAAAAATTTCTCGAAGGA
195 TTCGAAAAATTGCTCGAAGGA
* * * * * *
88164 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACACGCAGAATTTTGACAAGTT
1 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * * * *
88229 CGGAAGTTCGTCTAAGAACTAAGATAGAAATAAATCCCACGTAAATAAGTTTTTAATTCAAAG-G
66 CAGAAGTTCGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * ** * *
88293 CACAAACTTTTTTTACAAAATGACAAACTAGTTAAACTAAATGATATGGTTTC-CTAAGCATGGA
130 CA-AAAC-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGA
* *
88357 ATGCTCCAAAAATTGCTCGAAG
192 ATGTTCGAAAAATTGCTCGAAG
88379 TGTTGAATAC
Statistics
Matches: 541, Mismatches: 100, Indels: 9
0.83 0.15 0.01
Matches are distributed among these distances:
215 188 0.35
216 290 0.54
217 63 0.12
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (215 bp):
ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
CAGAAGTTCGTCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
TCGAAAAATTGCTCGAAGGA
Found at i:89203 original size:216 final size:215
Alignment explanation
Indices: 88759--90930 Score: 1981
Period size: 216 Copynumber: 10.4 Consensus size: 215
88749 TCCCGAGAAG
* * * * *
88759 ATTGCTCGACGAAATGCATCGTC-TGAATACTTTAAGGAACCGAAGTTATAAATGAACTAGTAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
88823 AGTTTGACAAGTTCGAAAGTTCGTCCCAAAACTAATAGAGAAACAATTCTCACATAAATAAGTTT
66 AGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * ** *
88888 TTAATTTAAAGACAAAAACCTGTTTA-ATAAATGACAAACAATTTAAACCAAATAATTTGATTAC
130 TTAATTCAAAGACCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTC
* * *
88952 CCGAGTATGAAATTTTC-AAAA
194 CCGAGCATGGAATGTTCGAAAA
* *
88973 TATTGCTCGAAGGAATGGATCGTCTAGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCGTAA
1 -ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* * * *
89038 AAGTTTGACAAGTTCAGAAGTTTGTCTCAAAACCAATAGAGAAACAATTCTCACATAAATAAGTC
65 AAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTT
*
89103 TTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
129 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
** * * *
89168 TTGTGCATGGAATGCTCGGAAA
194 CCGAGCATGGAATGTTCGAAAA
* * * * * *
89190 ATTCCTAGAAGGAATGGATCATCTTGAATACATTAAGGAACCAAAGTTAT-AACGAAACTCGTAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG-AACTCGTAA
* * *
89254 AAGTTTGACAAGTTCGGAAGTTCGTAACAAAACCTATAGAGAAACAATTCTCACGT--AGAAGTT
65 AAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * *
89317 TTTAATTTAAAGACCAAAACATGTTAACAAAATGATAAAATATTTAGACCAAATGATTCAATTTC
129 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
* *
89382 CCGAGCATGGAATGTTTGGAAA
194 CCGAGCATGGAATGTTCGAAAA
* * * * * * * *
89404 TTTGTTCGAAGGAATGGATCATCTTGAATACTTTTAAGGAACCGAAGTAACAAAGGATCTTGTAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
* ** * * * * *
89469 ATGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAATATTTCTCGCGTAAATACA-T
65 AAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAATAGAGAAACAATTCTCACGTAAATA-AGT
* ** * *
89532 TTTTAATTCAAATACCAAAACTTGTTTGGAAAATGACAAACTATTTAGACCAAATGAAGTGATTT
128 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
89597 --C---C-T-G-A-----G-AAA
193 CCCGAGCATGGAATGTTCGAAAA
* * * * *
89606 ATTGCTCGAAGGAATGCATTGTCTTGAATACTTGAAGGAACTGAAGTTATAAAAGAACTAGTAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* ** *
89671 ATTTTGACAAGTTCAAAAGTTCGTCCCAAAACCAATAGAGAAACAATTCTCATGTAAA-AAGTTT
66 AGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * *
89735 TTAATTTAAAGACCAAAATTTGTTTACAAAATTACAAACTATTTAGACCAAATGATTCAATTACT
130 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
89800 CGAGCATGGAATGTTCGAAAA
195 CGAGCATGGAATGTTCGAAAA
* * * *
89821 ATTGCTTGAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCAAAGTTATAAAGGAACTCGTAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * * * *
89886 AGTTTGACAATTTCGAAAGTTCCTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
66 AGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * *
89951 TTAATTCAAAGA-CACAA-TTTTTTACAAAATGAAAAACTATTTAGACCAAATAATGCGATTTCA
130 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
*
90014 CGAGAATGGAATGTTC-AGAAA
195 CGAGCATGGAATGTTCGA-AAA
* * * *
90035 ATTGCTCGAGGGAATTGATAGTCTTGAATAC-TTAAGGTACC-----------A-AA---GTAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
90084 AGTTTGACAAGTTCGGAAGTTCATCCTAAAACCAATAGAGAAACAATTCTCATGTAAATGAGTTT
66 AGTTTGACAAGTTCGGAAGTTCGTCC-AAAACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
* * ** * * *
90149 TTAATTCAAAGACGAAAACATGTTTACCGAATGACAAAATATTTAGACAAAATGATTC-ACTTTC
130 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTC
90213 CCGAGCATGGAATGTTCGAAAA
194 CCGAGCATGGAATGTTCGAAAA
* * * * * * *
90235 ATTGTTCGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATA-TTGTA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGA-ACTCGTA
*** * *
90299 AAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACCCA-AGAGAAACAATTCTTACGTAAATAAG-
64 AAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAATAGAGAAACAATTCTCACGTAAATAAGT
* * *
90362 --TT-ATTCAAAGACCAAAAGTTGATAACAAAATGA-AAAGCTATTT--ACCAAATGATGCGATT
128 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCAAATGATGCGATT
* *
90421 TCCCGAGAATGGAATGTTCAAAAA
192 TCCCGAGCATGGAATGTTCGAAAA
* * *
90445 ATTGCTCAAAGGAATGGATCGTCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
90510 AGTTTGACAAGTTCGGAAGTTCGTCTCAGAACCAATAGAGGAACAATTGTCACGTAAATAAGTTT
66 AGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTTT
*** * * * *
90575 TTAATTC-AAGGTTAAAAGTT-TATAACAAAATGACAAATTATTTAGACAAAACT-ATGCGA---
130 TTAATTCAAAGACCAAAACTTGT-TTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTT
*
90634 --C---CATGGAATGTTTGAAAA
193 CCCGAGCATGGAATGTTCGAAAA
* * * * * * * *
90652 ATT-CTTCAAAGGAATGAATCATCTTGAATCCTTTTTAA-GAACCAAAGTAATAAAGGATA-TTG
1 ATTGC-TCGAAGGAATGGATCGTCTTGAATAC--TTTAAGGAACCGAAGTTATAAAAGA-ACTCG
*** ** *
90714 TAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAAAACC-A-AGAGAAACAATTCTCATATAAATAC
62 TAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAAACCAATAGAGAAACAATTCTCACGTAAATAA
* * * * *
90777 GTTTTTAATTCAAAGACCAAAAC-TGTTTAGAATATGACAAACTATTTAAACCACATGATGTGAT
126 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
90841 TT-CC---C---G-A------AAAA
191 TTCCCGAGCATGGAATGTTCGAAAA
* * * * * *
90852 ATTACTTGAAGGAATGGATTGTCTTGAATACTTTATGGAACCGAAGTTATAAAATAACTCATAAA
1 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
90917 AGTTTGACAAGTTC
66 AGTTTGACAAGTTC
90931 TGATACGTCC
Statistics
Matches: 1601, Mismatches: 272, Indels: 184
0.78 0.13 0.09
Matches are distributed among these distances:
198 77 0.05
199 40 0.02
200 107 0.07
201 111 0.07
202 60 0.04
203 2 0.00
205 1 0.00
206 62 0.04
207 50 0.03
208 52 0.03
209 63 0.04
210 88 0.05
211 5 0.00
212 29 0.02
213 40 0.02
214 221 0.14
215 193 0.12
216 363 0.23
217 37 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (215 bp):
ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
AGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
GAGCATGGAATGTTCGAAAA
Found at i:89356 original size:21 final size:21
Alignment explanation
Indices: 89332--89373 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
89322 TTTAAAGACC
89332 AAAACATGTTA-ACAAAATGAT
1 AAAACAT-TTAGACAAAATGAT
* *
89353 AAAATATTTAGACCAAATGAT
1 AAAACATTTAGACAAAATGAT
89374 TCAATTTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (21 bp):
AAAACATTTAGACAAAATGAT
Found at i:89834 original size:631 final size:627
Alignment explanation
Indices: 87517--90930 Score: 2766
Period size: 631 Copynumber: 5.4 Consensus size: 627
87507 AGATCGTATC
* * * * * * * *
87517 ATGGATCGTCTTCAATACTTTAAGGAATCGAAGTTATTAAA-GAAATCGAAAAAGTTTGACATGT
1 ATGGATCATCTTGAATACTTTAAGGAACCGAAG-TAATAAAGGAACTTGTAAAAGTTTGACAAGT
* * ** * * * *
87581 TCAGAAGTTTGTGTTAGAACCAATAGTGAAACAATTCTCATGTAAATAAGTTTTTAACTCAAAGA
65 TCGGAAGTTCGT-CCAAAACCAA-AGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGA
* * * * *
87646 CCAAAACTTGTTTACGAAATGACAAACTATTTAGATCAAATGATGCGATTTCTTGTGCATGGAAT
127 CCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAATGAAGTGATTTC-----C-T-G-A-
* * *
87711 GTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGA
183 ----G-AAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * *** * * *
87776 ACTCGTAAAAGTATGACAAGTTCAAAAGTTCAT-CCGTGACTAAGAGAGAAACGATTCTCCCGTA
243 ACTAGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCCAAAACCAAGAGAGAAACAATTCTCACGTA
* * * * * *
87840 AATAAGCTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAGTGAT
308 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * *
87905 GCAATTTCCCGAGCATGGAATGTTTGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATGCTTTA
373 GCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTA
* *
87970 AGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAAAACCAA
438 AGGAACCGAAGTTATAAGA-AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAA
* * * *
88035 TAGAGAAATAATTTTCACGTTAATAAGTTTTTAATTTAAAGACCCAAACCTGTTTACAAAATGAC
501 TAGAGAAACAATTCTCACG-TAATAAGTTTTTAATTTAAAGA-CAAAACTTGTTTACAAAATGAC
* * * * * *
88100 AAACTATTTAGACCAAATGATTCGATTACTCGAGCATGGAATGTTCGAAAAATTTCTCGAAGGA
564 AAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGA
* * * ** * * *
88164 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACACGCAGAATTTTGACAAGTT
1 ATGGATCATCTTGAATACTTTAAGGAACCGAAGTAATAAAGGAACTTGTAAAAGTTTGACAAGTT
* * * * * * *
88229 CGGAAGTTCGTCTAAGAACTAAGATAGAAATAAATCCCACGTAAATAAGTTTTTAATTCAAAG-G
66 CGGAAGTTCGTCCAA-AACCAA-AGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGAC
* * * * * *
88293 CACAAACTTTTTTTACAAAATGACAAACTAGTTAAACTAAATGATA-TGGTTTCCTAAGCATGGA
128 CA-AAAC-TTGTTTACAAAATGACAAACTATTTAAACCAAATGA-AGTGATTTCCTGAG-A--AA
* * * * *
88357 A-TGCTCCAA-AAATTGCTCGA-AGTGTTGAATACTTTAA-G---C-------T--AACAA--AG
187 ATTGCTCGAAGGAA-TG---GATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAG
* * * ** ** * * * *
88404 TAAAAGTTTGAAAAGTTTAGAAGTTTTTCCTTAAA-CAAGAAAGCAACAATTCTAACGTAAATGA
248 TAAAAGTTTGACAAGTTCAAAAGTTCGTCCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
88468 GTTTTTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAAACAAAATGATTCAAT
313 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAAT
* * *
88533 TTCTCGAACATGGAATGTTCGGAAAATT-TTTCGAAGGAATGGATCGTCTTGAATACTTTCAAGG
378 TTCTCGAGCATGGAATGTTCGAAAAATTGCTT-GAAGGAATGGATCGTCTTGAATACTTT-AAGG
* * * * ** *
88597 AACTGAAGTAATAA-AGGA-TCTTAAAAATGTTTGACAAGTTCTTAAGTTCGTCCAAGAA-CTA-
441 AACCGAAGTTATAAGA-AACTCGT-AAAA-GTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAT
* * *
88658 AGAGAAACAATTCTCACGTAAATATGTTTTTAATTCAAAGACAAAACCTTGTTTAGAAAATGACA
502 AGAGAAACAATTCTCACGT-AATAAGTTTTTAATTTAAAGACAAAA-CTTGTTTACAAAATGACA
* * * * * *
88723 GACTATTTACACTAAATGATGCGATTTCCC--G-A--GAA------G---ATTGCTCGACGAA
565 AAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGA
* * * * *
88772 ATGCATCGTC-TGAATACTTTAAGGAACCGAAGTTATAAATGAACTAGTAAAAGTTTGACAAGTT
1 ATGGATCATCTTGAATACTTTAAGGAACCGAAGTAATAAAGGAACTTGTAAAAGTTTGACAAGTT
* * * *
88836 CGAAAGTTCGTCCCAAAACTAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGAC
66 CGGAAGTTCGT-CCAAAACCAA-AGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGAC
* * * * *
88901 AAAAACCTGTTTA-ATAAATGACAAACAATTTAAACCAAAT-AATTTGATTACCCGAGTATGAAA
128 CAAAACTTGTTTACA-AAATGACAAACTATTTAAACCAAATGAA-GTGATT-TCC-----TG--A
* * * *
88964 TTTTCAAAATATTGCTCGAAGGAATGGATCGTCTAGAATACTTTAAGGAACTGAAGTTATAAAAG
183 -----GAAA-ATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * * * *
89029 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTTGTCTCAAAACCAATAGAGAAACAATTCTCACAT
242 AACTAGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCCAAAACCAAGAGAGAAACAATTCTCACGT
* *
89094 AAATAAGTCTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
307 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * * * * *
89159 TGCGATTTCTTGTGCATGGAATGCTCGGAAAATTCCTAGAAGGAATGGATCATCTTGAATACATT
372 TGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTT
* * *
89224 AAGGAACCAAAGTTATAACGAAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTAACAAAACCT
437 AAGGAACCGAAGTTATAA-GAAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCA
* * * *
89289 ATAGAGAAACAATTCTCACGT-AGAAGTTTTTAATTTAAAGACCAAAACATGTTAACAAAATGAT
500 ATAGAGAAACAATTCTCACGTAATAAGTTTTTAATTTAAAGA-CAAAACTTGTTTACAAAATGAC
* * * * *
89353 AAAATATTTAGACCAAATGATTCAATTTCCCGAGCATGGAATGTTTGGAAATTTGTTCGAAGGA
564 AAAATATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGA
* * *
89417 ATGGATCATCTTGAATACTTTTAAGGAACCGAAGTAACAAAGGATCTTGTAAATGTTTGACAAGT
1 ATGGATCATCTTGAATAC-TTTAAGGAACCGAAGTAATAAAGGAACTTGTAAAAGTTTGACAAGT
** * * * * * *
89482 TCTTAAGTTCATCCAAGAACCCAAGAGAAATATTTCTCGCGTAAATACATTTTTAATTCAAATAC
65 TCGGAAGTTCGTCCAA-AACCAAAGAGAAACAATTCTCACGTAAATA-ATTTTTAATTCAAAGAC
** *
89547 CAAAACTTGTTTGGAAAATGACAAACTATTTAGACCAAATGAAGTGATTTCCTGAGAAAATTGCT
128 CAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAATGAAGTGATTTCCTGAGAAAATTGCT
* * * *
89612 CGAAGGAATGCATTGTCTTGAATACTTGAAGGAACTGAAGTTATAAAAGAACTAGTAAAATTTTG
193 CGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTG
* *
89677 ACAAGTTCAAAAGTTCGTCCCAAAACCAATAGAGAAACAATTCTCATGTAAA-AAGTTTTTAATT
258 ACAAGTTCAAAAGTTCGTCCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
89741 TAAAGACCAAAATTTGTTTACAAAATTACAAACTATTTAGACCAAATGATTCAATTACTCGAGCA
323 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCA
* *
89806 TGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCAAAGTTAT
388 TGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * *
89871 AAAGGAACTCGTAAAAGTTTGACAATTTCGAAAGTTCCTCCAAGAACCAAGAGAGAAACAATTCT
453 -AAGAAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAATAGAGAAACAATTCT
* * * *
89936 TACGTAAATAAGTTTTTAATTCAAAGACACAA-TTTTTTACAAAATGA-AAAACTATTTAGACCA
516 CACGT-AATAAGTTTTTAATTTAAAGACAAAACTTGTTTACAAAATGACAAAA-TATTTAGACCA
* * * * *
89999 AATAATGCGATTTCACGAGAATGGAATGTTCAGAAAATTGCTCGAGGGA
579 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGA
* *
90048 ATTGAT-AGTCTTGAATAC-TTAAGGTACC----------A--AA---GTAAAAGTTTGACAAGT
1 ATGGATCA-TCTTGAATACTTTAAGGAACCGAAGTAATAAAGGAACTTGTAAAAGTTTGACAAGT
* * *
90096 TCGGAAGTTCATCCTAAAACCAATAGAGAAACAATTCTCATGTAAATGAGTTTTTAATTCAAAGA
65 TCGGAAGTTCGTCC-AAAACCAA-AGAGAAACAATTCTCACGTAAAT-AATTTTTAATTCAAAGA
* * ** * * * * *
90161 CGAAAACATGTTTACCGAATGACAAAATATTTAGACAAAATG-ATTCACTTTCCCGAGCATGGAA
127 CCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAATGAAGTGA-TTT--C---C-T-G-A
* * * * *
90225 TGTTCGAAAAATTGTTCGAAGGAATAGATTGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAG
183 -----G-AAAATTGCTCGAAGGAATGGATTGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAA
* *** * *
90290 GATA-TTGTAAAAGTTTGACAAGTTCTTCAGTTCGT-CCAAGAACCCA-AGAGAAACAATTCTTA
241 GA-ACTAGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCCAA-AACCAAGAGAGAAACAATTCTCA
* * *
90352 CGTAAATAAG---TT-ATTCAAAGACCAAAAGTTGATAACAAAATGA-AAAGCTATTT--ACCAA
304 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCAA
* * * * ** *
90410 ATGATGCGATTTCCCGAGAATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTCAATA
368 ATGATGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATA
* * *
90475 TTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTCAGA
433 CTTTAAGGAACCGAAGTTATAAGA-AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAA
* * * * ** * *
90540 ACCAATAGAGGAACAATTGTCACGTAAATAAGTTTTTAATTCAAGGTTAAAAGTT-TATAACAAA
496 ACCAATAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTTAAAGACAAAACTTGT-TTACAAA
* * * *
90604 ATGACAAATTATTTAGACAAAACT-ATGCGA-----C---CATGGAATGTTTGAAAAATT-CTTC
559 ATGACAAAATATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGC-TC
*
90659 AAAGGA
622 GAAGGA
* * *
90665 ATGAATCATCTTGAATCCTTTTTAA-GAACCAAAGTAATAAAGGATA-TTGTAAAAGTTTGACAA
1 ATGGATCATCTTGAATAC--TTTAAGGAACCGAAGTAATAAAGGA-ACTTGTAAAAGTTTGACAA
*** ** *
90728 GTTCTTCAGTTCGTCCAAAAACC-AAGAGAAACAATTCTCATATAAATACGTTTTTAATTCAAAG
63 GTTCGGAAGTTCGTCC-AAAACCAAAGAGAAACAATTCTCACGTAAATA-ATTTTTAATTCAAAG
* * * * * * *
90792 ACCAAAAC-TGTTTAGAATATGACAAACTATTTAAACCACATGATGTGATTTCCCGAAAAAATTA
126 ACCAAAACTTGTTTACAAAATGACAAACTATTTAAACCAAATGAAGTGATTTCCTGAGAAAATTG
* * *
90856 CTTGAAGGAATGGATTGTCTTGAATACTTTATGGAACCGAAGTTATAAAATAACTCA-TAAAAGT
191 CTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-AGTAAAAGT
90920 TTGACAAGTTC
255 TTGACAAGTTC
90931 TGATACGTCC
Statistics
Matches: 2239, Mismatches: 384, Indels: 319
0.76 0.13 0.11
Matches are distributed among these distances:
604 1 0.00
605 2 0.00
606 31 0.01
607 103 0.05
608 23 0.01
612 1 0.00
614 37 0.02
615 75 0.03
616 56 0.03
617 72 0.03
618 11 0.00
619 8 0.00
620 7 0.00
621 6 0.00
622 81 0.04
623 167 0.07
624 197 0.09
625 39 0.02
626 37 0.02
627 4 0.00
628 1 0.00
629 70 0.03
630 62 0.03
631 412 0.18
632 311 0.14
633 47 0.02
634 35 0.02
635 4 0.00
636 11 0.00
637 3 0.00
638 15 0.01
639 2 0.00
640 3 0.00
642 2 0.00
643 1 0.00
645 19 0.01
646 92 0.04
647 156 0.07
648 35 0.02
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (627 bp):
ATGGATCATCTTGAATACTTTAAGGAACCGAAGTAATAAAGGAACTTGTAAAAGTTTGACAAGTT
CGGAAGTTCGTCCAAAACCAAAGAGAAACAATTCTCACGTAAATAATTTTTAATTCAAAGACCAA
AACTTGTTTACAAAATGACAAACTATTTAAACCAAATGAAGTGATTTCCTGAGAAAATTGCTCGA
AGGAATGGATTGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
AGTTCAAAAGTTCGTCCCAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGG
AATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAG
AAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAATAGAGAAACAATTCTCACGT
AATAAGTTTTTAATTTAAAGACAAAACTTGTTTACAAAATGACAAAATATTTAGACCAAATGATG
CGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGA
Found at i:90436 original size:210 final size:210
Alignment explanation
Indices: 90079--90825 Score: 654
Period size: 210 Copynumber: 3.5 Consensus size: 210
90069 AGGTACCAAA
*** * * *
90079 GTAAAAGTTTGACAAGTTCGGAAGTTCATCCTAA-AACCAATAGAGAAACAATTCTCATGTAAAT
1 GTAAAAGTTTGACAAGTTCTTCAGTTCGTCC-AAGAACCCA-AGAGAAACAATTCTCACGTAAAT
* * ** * * ** * *
90143 GAGTTTTTAATTCAAAGACGAAAACATGTTTACCGAATGACAAAATATTTAGACAAAA-TGATTC
64 AAG--TTTAATTC-AAGACCAAAAGTTGATAACAAAATGACAAACTATTTA-ACAAAACT-ATGC
* *
90207 -ACTTTCCCGAGCATGGAATGTTCGAAAAATTGTTCGAAGGAATAGATTGTCTTGAATACTTTTA
124 GA-TTTCCCGAG-ATGGAATGTTCGAAAAATTGTTCAAAGGAAT-GATCGTCTTGAATACTTTTA
90271 AGGAACCAAAGTAATAAAGGATATT
186 AGGAACCAAAGTAATAAAGGATATT
*
90296 GTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACCCAAGAGAAACAATTCTTACGTAAATAA
1 GTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACCCAAGAGAAACAATTCTCACGTAAATAA
*
90361 G-TT-ATTCAAAGACCAAAAGTTGATAACAAAATGA-AAAGCTATTT-ACCAAA-TGATGCGATT
66 GTTTAATTC-AAGACCAAAAGTTGATAACAAAATGACAAA-CTATTTAACAAAACT-ATGCGATT
* * *
90421 TCCCGAGAATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTCAATA-TTTTAAGGAA
128 TCCCGAG-ATGGAATGTTCGAAAAATTGTTCAAAGGAAT-GATCGTCTTGAATACTTTTAAGGAA
* * * *
90485 CCGAAGTTATAAAAGA-ACTC
191 CCAAAGTAATAAAGGATA-TT
*** * * *
90505 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATAGAGGAACAATTGTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCTTCAGTTCGTC-CAAGAACCCA-AGAGAAACAATTCTCACGTAAAT
*** * *
90569 AAGTTTTTAATTCAAGGTTAAAAGTTTATAACAAAATGACAAATTATTTAGACAAAACTATGCGA
64 AAG--TTTAATTCAAGACCAAAAGTTGATAACAAAATGACAAACTATTTA-ACAAAACTATGCGA
* * * *
90634 ----CC---ATGGAATGTTTGAAAAATTCTTCAAAGGAATGAATCATCTTGAATCCTTTTTAA-G
126 TTTCCCGAGATGGAATGTTCGAAAAATTGTTCAAAGGAATG-ATCGTCTTGAATAC-TTTTAAGG
90691 AACCAAAGTAATAAAGGATATT
189 AACCAAAGTAATAAAGGATATT
* ** *
90713 GTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAA-AAACCAAGAGAAACAATTCTCATATAAATAC
1 GTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACCCAAGAGAAACAATTCTCACGTAAATAA
* * * * *
90777 GTTTTTAATTCAAAGACCAAAA-CTGTTTAGAATATGACAAACTATTTAA
66 G--TTTAATTC-AAGACCAAAAGTTGATAACAAAATGACAAACTATTTAA
90826 ACCACATGAT
Statistics
Matches: 437, Mismatches: 73, Indels: 52
0.78 0.13 0.09
Matches are distributed among these distances:
205 1 0.00
206 51 0.12
207 49 0.11
208 46 0.11
209 65 0.15
210 83 0.19
211 6 0.01
212 29 0.07
213 31 0.07
214 7 0.02
215 11 0.03
216 26 0.06
217 32 0.07
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (210 bp):
GTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACCCAAGAGAAACAATTCTCACGTAAATAA
GTTTAATTCAAGACCAAAAGTTGATAACAAAATGACAAACTATTTAACAAAACTATGCGATTTCC
CGAGATGGAATGTTCGAAAAATTGTTCAAAGGAATGATCGTCTTGAATACTTTTAAGGAACCAAA
GTAATAAAGGATATT
Found at i:91440 original size:32 final size:32
Alignment explanation
Indices: 91397--91459 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
91387 AGCTGAAATT
* *
91397 AATTAGCTGATTAATGTGTTTCAGGTACATGC
1 AATTAGCTGATTAATATATTTCAGGTACATGC
*
91429 AATTAGTTGATTAATATATTTCAGGTACATG
1 AATTAGCTGATTAATATATTTCAGGTACATG
91460 TATGGATGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (32 bp):
AATTAGCTGATTAATATATTTCAGGTACATGC
Found at i:93292 original size:216 final size:216
Alignment explanation
Indices: 92450--97904 Score: 4916
Period size: 215 Copynumber: 25.7 Consensus size: 216
92440 AAGTTGAGAT
* * * * *
92450 GTTCATCCATGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGTCCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * ** **
92515 GTTGATACCAAAATTACAAACTATTTAGACTAAACT-ATGCGATTT-TCGAGTGTGGAATGTTTG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTCA
* * * * * *
92578 GAAAATTGCTTGAAGGAATGGATTGTCCTAAAT-TCTTTAAGGAATCAAAGTTATAAAAGAACTC
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACTC
*
92642 GTAAAAGTTTGACAAGTTCGAAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * *
92665 GTTTGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTAATTC-AAGATCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * **
92729 ATTGATGATAAAATGACAAACAATTTAGACAAAACT-ATGTGATTTCCCGATCATGGAATGTTTG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTCA
* * *
92793 GAAAATTGCTCAAAGGAATGGATTGTCTTGAAT-TCTTTAAGGAACCGAAGTAATAAAAGAACTC
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACTC
*
92857 GTAAAAGTTTGACAAGTTTGGAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * * * * *
92880 ATTTGTCTC-AGAACCAATAAAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAGACAAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * **
92944 ATTTGTTTACAAAAATGACAAACTATTTAAACCAAATGATGCGATTT-CTTATGCATGGAATGTT
65 AGTTGATAAC-AAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGA-GCATGGAATGTT
* * * ** * *
93008 C-GAAAAATTGCTCAAAGCAATGGATCATCTTGAATACATTAAGGAATCGAAGTTA-AAACGAAA
128 CAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAG-AA
*
93071 CTCGTAAAAGTTTGACAAGTTCAGAA
191 CTCGTAAAAGTTTGACAAGTTCGGAA
* * * * *
93097 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGCAAATAAGCTTTTAATTCAAAGTCCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
93162 GTTGATAACAAAATGAAAAACTA-CTAGGACCAAATGATGTGATTTCCCGAGCATGGAATGTTTA
66 GTTGATAACAAAATGACAAACTATTTA-GACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * *
93226 GAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTATGGAACCGAAGTTATAAAAGTACTCG
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
93291 TAAAAGTTTGACAAGTTCGAAA
195 TAAAAGTTTGACAAGTTCGGAA
* * *
93313 GTTCATCTC-AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * ** * **
93377 ATTTGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGGTTTCTTGTGCATGGAATGTTTG
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * * ** ** ***
93442 GAAAATTACTTGAAGGAATAGATCATCTTGAATACATTAAGGAACAAAAGTTATTACCGGAACTC
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTA-TAAAAGAACTC
*
93507 GTAAAAGTTTGACAAGTTCAGAA
194 GTAAAAGTTTGACAAGTTCGGAA
* ** * *
93530 GTTCATCCGTGAACCAAGAGAGAAATAATTCTCACGTAAATAAG---TT-ATTCATAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * **
93591 GTTGATAACAAAATGAAAAACTATTTAGACTAAATGATAAGATTTCCCGAGCATGGAATGTTCAG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG
* * * * * ** * **
93656 AAAATTACTCGAAAGAGTGGATCGTTTTCAATATTTTAAACAACCAAAGTTATAAAAGATTTCGT
131 AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGT
*
93721 AAAAGTTTGA-AGAGTTTGGAA
196 AAAAGTTTGACA-AGTTCGGAA
* * * *
93742 GTTCGTCTC-AGAACCAATAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTC-AAGATCAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* ** *
93805 AGTTGATAACAAAATGAC-AA-TAATTTAGACAAAACT-ATGCAATTTCCCGTGCATGGAATGTT
65 AGTTGATAACAAAATGACAAACT-ATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTT
* * * * * * * * * *
93867 CAAAAAATTGTTCAAAGGAATGAAACGTCTTGAATACTTTTTAA-GAAACAAAGTAATAAAGGAT
128 CAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA--TTTTAAGGAACCGAAGTTATAAAAGAA
* * **
93931 CTTGTAAAAGTTTCACAAGTTCTTCAA
191 CTCGTAAAAGTTTGACAAGTTC-GGAA
* * *
93958 -TTCGTCCAAGAGCC-A-AGAGAAACAATTCTCACGTAAATACGATTTTAATTCAAAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * *
94020 CTTGTTTAA-AATACGACAAACTATTTAAACCAAATGATGCGATTT-CC---C-------G---A
66 GTTG-ATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * * * * *
94070 GAAAATTGCTTGAAGGAATAGACCGTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCA
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
94135 TAAAAGTTTGACAAGTTCGGAT
195 TAAAAGTTTGACAAGTTCGGAA
* * *
94157 GTTCGTCCATGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTAATTCAAAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * *
94222 GTTGATAACAAAATGACAAACCATTTAGACTAAACT-ATGCGATTTTCTGAGCATGGAATGTTCG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTCA
* * * *
94286 GAAAATTACTCGAAGGAATGAATCGTCTTGAAT-TCTTAAAGGAACTGAAGTTATAAAAGAACTC
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACTC
* * *
94350 ATAAAAGTTTGACAAGTTTGAAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * * * *
94373 GTTTGTCC-AGGACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTAAATTC-AAGATCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * **
94436 GTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCGAGCATGGAATGTTTG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTCA
* * ** *
94500 GAAAATTGCTCGAAGGAGTGGATCATCTTGAAT-TCTTTAAGGAGTCGAAGTTATAAAAGAACTT
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACTC
*
94564 GTAAAAGTTTGACAAGTTCGAAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * * **
94587 GCTT-GTCTCAA-AACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTAAATTTAAAGAAAAA
1 G-TTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG--ACC
* * * ** *
94650 AAAATTTGTTTAGA-AAAATGACAAACTA--TAGACCAAATGATGCGATTTCTTGTGCATGGAAT
62 AAAAGTTG-ATA-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAAT
* * * * ** *
94712 GTTCAAAAAATTGCTCAAAGGAATGGATCATTTTGAATACATTAAGGAACCGAAGTTATAATAGA
125 GTTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGA
**
94777 ACTCGTAAAAGTTTGACAAGTTAAGAA
190 ACTCGTAAAAGTTTGACAAGTTCGGAA
* * * * * * *
94804 GTTCATCCAAGAATCAAAAGAGAAACAATTTTCA-TTCAAATAAGCTTTTAATTCAAAGTCCAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAA
* * *
94868 AGTTGATAAC-AAATGAAAAACTATTTGGATCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * * * *
94932 AAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTAAAGGAACAGAAGCTATAAAAGAAGTCG
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
94997 TAAAAGTTTAACAAGTTCGGAA
195 TAAAAGTTTGACAAGTTCGGAA
* * * *
95019 GTTCGTCTC-AGAACCAATAGTGAAACAATTCTCATGTAAATAAGTTTTTAATTCAGAGA-C-AA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * **
95081 ATTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTACGAGCATGGAATGTTCA
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * *
95146 GAAAATAGCTTGAAGGAATGGATCGTCTTGAATACTTT----AA--G--G---TAACA-AA---G
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
95196 TAAAAGTTTGATAAGTTCGGAA
195 TAAAAGTTTGACAAGTTCGGAA
* * * * ** *
95218 GTTCGTCCCAGAACCAAGAGAGAGAAATAATTCTCACATAAATTAGACTTTAATTCAAAGACCAT
1 GTTCGTCCAAGAACC-A-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
** * * * * * *
95283 AACATGTTTACAGAATGACAAAATATTTAGACAAAATGAT-TCAATTTCCCGAGCATGGAATGTT
64 AAGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTCCCGAGCATGGAATGTT
* * * * ** * *
95347 C-GAAAAATTGTTCAAAGAAATGGATAGTCTTGAATACTTTTATA-GAACAAAAGTAATAAAGGA
128 CAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATA-TTTTA-AGGAACCGAAGTTATAAAAGA
* ** ***
95410 TCTTATAAAAGTTTGACAAGTTCTTCA
190 ACTCGTAAAAGTTTGACAAGTTCGGAA
* *
95437 GTTCGTCCAAGAACC-A-AGATAAACAATTCTCATGTAAATACA-TTTTTAATTCAAAGACCAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAA
* * * * * *
95499 ACTTGTTTAGAATATGACAAACTATTTA-AGCCAAATGATGTGATTT------C-T----CG---
65 AGTTGATAACAAAATGACAAACTATTTAGA-CCAAATGATGTGATTTCCCGAGCATGGAATGTTC
* * * *
95549 AGAAAATTGCTTGAAGGAATGGATCGTTTTGAATACTTTATGGAACCGAAGTTATAAAA-AACTC
129 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* *
95613 GTAAAAGTTTGACAAGTTTGGAT
194 GTAAAAGTTTGACAAGTTCGGAA
* * *
95636 GTTCGTCCATGAACCAA-AGGAGAAACAGTTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAA
1 GTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * *
95700 AGTTGATAACAAAATGGCAAACTATTTAGACTAAACT-ATGTGATTTTCCAAGAATTGAATGTTC
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTC
* * * * * *
95764 GGAAAATTACTCAAAGGAATGGATCATCTTGAAT-TCTTTAAGGAATCGAAGTTATAAAAGAAGT
129 AGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACT
* *
95828 CGTAAAAGTTTGAAAAGTTCGAAA
193 CGTAAAAGTTTGACAAGTTCGGAA
* *
95852 GTTCGTCCAAGAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTC-AAGATCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * ** *
95916 GTTGATAACAAAATGAAAAACTA--T--ACAAAACT-ATATGATTTTTCGAGCATGGAATGTTCG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCCCGAGCATGGAATGTTCA
95976 GAAAATTGCTCGAAGGAATGGATCGTCTTGAAT-TCTTTAAGGAACCGAAGTTATAAAAGAACTC
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATAT-TTTAAGGAACCGAAGTTATAAAAGAACTC
* *
96040 GTAAAGGTTTGACAACTTCGGAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * * * *
96063 GTTTGTCTC-AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAAACAAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * ** ** * * * *
96127 AATTGTTTACAAAATGACAAACTGTTTAGACCAAATGATGCAATTTCTTGTGCGTGGAAAGCTC-
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* ** * **
96191 GAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACATTAATGAACCGAAGTTATAATCGAACTC
130 G-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
* *
96256 GT-AATGTTTGACAAGTTTGGAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * *
96278 GTTCATCCAAGAACCAAGAGAGAAACAATTCGCACGCAAATAAGTTTTTAATTCAAAGA-CAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
96342 GTTGATAACAAAATGA-AAACCTATTTAGACCAAATGATGCGATTTCTCGGGCATGGAATGTTCA
66 GTTGATAACAAAATGACAAA-CTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * * *
96406 AAAAATTGCTCGAAGGAATGGATCAT-TTCAATATTTTAAGGAACCGAAGTTATAAAAGAATTAG
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
* *
96470 TAAAAGTTTAACAAGTTTGGAA
195 TAAAAGTTTGACAAGTTCGGAA
** * * * *
96492 GTTCGTCTTAGAA-CAAGTAGAGAAAAAATTCTCTCGTAAAAAAGTTTTTAATTCAAAGACAAAA
1 GTTCGTCCAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * ** * ** *
96556 ATTTGTTTACTGAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGTGCATGGAATGGTT-
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAAT-GTTC
* * ** *
96620 GGAAAATTGCTC-AAGGAAATGTATCGTCTTGAATACATTAAGGAACCGAAGTTA-AAACGAAAC
129 AGAAAATTGCTCGAAGG-AATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAG-AAC
**
96683 TCGTAAAAGTTTGACAAGTTCAAAA
192 TCGTAAAAGTTTGACAAGTTCGGAA
* *
96708 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAACA-CACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AA
* ** * * ** **
96772 ACTTTTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTTGAGCATGGAATGTTCA
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * *
96837 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT---------AAG--ATAACA-AA---G
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
96887 TAAAAGTTTGACAAGTTCGGAA
195 TAAAAGTTTGACAAGTTCGGAA
* * * * *
96909 GTTCGT-CTAGAACCAAGAGAGAAACAATTCTCATGTAAATGAGTTTTTAATTCAAAGTCTAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
** ** * * * * * * **
96973 CATCTTTACGAAATGACAAACTATTTAGACAAAATGAT-TCAATTTCTCGAGCATTGAATGTTGG
66 GTTGATAACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTCCCGAGCATGGAATGTTCA
* * * * * * * * *
97037 GAAAAATT-TTTGAAGG-ATGGATCATCTTGGAA-ACTTTTAAAGAGCCAAAGTAATAAAGGATC
130 G-AAAATTGCTCGAAGGAATGGATCGTCTT-GAATA-TTTTAAGGAACCGAAGTTATAAAAGAAC
* **
97099 TCGTGAAAGTTTGACAAGTTCTTAA
192 TCGTAAAAGTTTGACAAGTTCGGAA
*
97124 GTTCGTCCAAGAACCCA-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * *
97188 CTTGTTTAGAAAATGACAAACTATTTAAATCAAATGAAGCT-ATTT-CC---C-------G---A
66 GTTGATAACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTCCCGAGCATGGAATGTTCA
* * * * * * * * *
97238 GAAAATTTCTCGAAGGAATGCATAGTCTTAAATACTCTAAGGAACCAAAGTTATGAAAGAACTAG
130 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCG
*
97303 TAAAAGTTTGACAAGTTTGGAA
195 TAAAAGTTTGACAAGTTCGGAA
* * * *
97325 GTTCATCCCAA-AACCAATAGAGAAACAATTCTCACGTTAA-AAGTTTTTAATTTAAAGACCAAA
1 GTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
** * * *
97388 ACCT-ATTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGATTACCTGAGCATGGAATGTT
65 AGTTGA-TAACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTCCCGAGCATGGAATGTT
* * * *
97451 C-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAGCTGCAA--TATAAAGGAA
128 CAG-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCG-AAGTTATAAAAGAA
* * * *
97513 CTCATAAAAGTTTGATAGGTTCGAAA
191 CTCGTAAAAGTTTGACAAGTTCGGAA
* * *
97539 GTTTGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGA-CACTA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AA
* ** * * * * *
97603 ACTTTTTTACAAAATGACAAACTATTTAAACCAAATGATTTGATTTCACGAGAATGGAATGTTC-
65 AGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCA
* * * ** * * **
97667 GAAAAATTACTCGAAGGAATTGATAGTCTTGAATACATTAATGAACCAAAGTTATAACGGAACTC
130 G-AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTC
**
97732 GTAAAAGTTTGACAAGTTCAAAA
194 GTAAAAGTTTGACAAGTTCGGAA
* * * * * *
97755 GTTTGTCCAAGACCCAAGAGGGAAACAATTCTCATGCAAATAAGTTTTTAATTCTAAGA-CAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
97819 GTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTCA-
66 GTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG
97883 AAAAGTTGCTCGAAGGAATGGA
131 AAAA-TTGCTCGAAGGAATGGA
97905 AAGATGCGAG
Statistics
Matches: 4293, Mismatches: 740, Indels: 414
0.79 0.14 0.08
Matches are distributed among these distances:
198 1 0.00
199 86 0.02
200 188 0.04
201 317 0.07
202 119 0.03
203 87 0.02
204 8 0.00
205 2 0.00
206 4 0.00
207 3 0.00
208 5 0.00
209 4 0.00
210 2 0.00
211 163 0.04
212 91 0.02
213 204 0.05
214 578 0.13
215 1145 0.27
216 828 0.19
217 401 0.09
218 8 0.00
219 48 0.01
220 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
GTTGATAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAG
AAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCGAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCGGAA
Found at i:94340 original size:631 final size:628
Alignment explanation
Indices: 92450--97869 Score: 4456
Period size: 631 Copynumber: 8.5 Consensus size: 628
92440 AAGTTGAGAT
* * * *
92450 GTTCATCCATGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTCAA-AGTCCAAA
1 GTTCGTCCA-GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGA-T-CAAA
* * * * ** *
92514 AGTTGATACCAAAATTACAAACTATTTAGACTAAACT-ATGCGATTT-TCGAGTGTGGAATGTTT
63 AGTTGATAACAAAATGACAAAC-ATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTC
** * ** * * * * *
92577 GGAAAATTGCTTGAAGGAATGGATTGTCCTAAAT-TCTTTAAGGAATCAAAGTTATAAAAGAACT
126 AAAAAATTGCTCGAAGGAATGGATCATCTTGAATAT-TTTAAGGAACCAAAGTTATAAAGGATCT
* *
92641 CGTAAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAAT
190 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAAT
* * * * * * *
92706 AAGTTTTTAATTC-AAGATCAAAAATTGATGA-TAAAATGACAAACAATTTAGACAAAACT-ATG
253 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAA-TGATG
* * * *
92768 TGATTTCCCGATCATGGAATGTTTGGAAAATTGCTCAAAGGAATGGATTGTCTTGAATTCTTTAA
317 CGATTT-CC---C---G-A------GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * * * * *
92833 GGAACCGAAGTAATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTTGTCTCAGAACCAAT
368 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAG
* * * * *
92898 AAAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTTACAAAAATGAC
432 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTAC-AAAATGAC
* * * *
92963 AAACTATTTAAACCAAATGATGCGA-TTTCTTATGCATGGAATGTTCGAAAAATTGCTCAAAGCA
496 AAACTATTTAGACCAAATGATGCGATTTTCTGA-GCATGGAATGTTCGAAAAATTGCTCGAAGGA
* *
93027 ATGGATCATCTTGAATACATTAAGGAA-TCGAAGTTA-AAACGAAACTCGTAAAAGTTTGACAAG
560 ATGGATCGTCTTGAATAC-TTAAGGAACT-GAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAG
*
93090 TTCAGAA
622 TTCGGAA
* * *
93097 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGCAAATAAGCTTTTAATTCAA-AGTCCAAA
1 GTTCGTCC-AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGA-T-CAAA
* * * *
93161 AGTTGATAACAAAATGAAAAAC-TACTAGGACCAAATGATGTGATTTCCCGAGCATGGAATGTTT
63 AGTTGATAACAAAATGACAAACAT-TTA-GACCAAATGATGCGATTTCCCGAGCATGGAATGTTC
* * * * * *
93225 AGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTATGGAACCGAAGTTATAAAAG-TACT
126 AAAAAATTGCTCGAAGGAATGGATCATCTTGAATATTTTAAGGAACCAAAGTTATAAAGGAT-CT
*
93289 CGTAAAAGTTTGACAAGTTCGAAAGTTCATCTC-AGAACCAATAGAGAAACAATTCTCACGTAAA
190 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACC-A-AGAGAAACAATTCTCACGTAAA
* * *
93353 TAAGTTTTTAATTCAAAGACAAAAATTTGTTTAC-AAAACGACAAACTATTTAGACCAAATGATG
252 TAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATG
* * * * * * *
93417 CGGTTTCTTGTGCATGGAATGTTTGGAAAATTACTTGAAGGAATAGATCATCTTGAATACATTAA
317 CGATTTC-----C--CG-A------GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* *** * * *
93482 GGAACAAAAGTTATTACCGGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCGTGAACCAA
368 GGAACCAAAGTTA-TAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAA
* * * * *
93547 GAGAGAAATAATTCTCACGTAAATAAG---TT-ATTCATAGACCAAAAGTTGATAACAAAATGAA
431 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGAC
* ** * * * *
93608 AAACTATTTAGACTAAATGATAAGATTTCCCGAGCATGGAATGTTC-AGAAAATTACTCGAAAGA
496 AAACTATTTAGACCAAATGATGCGATTTTCTGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGA
* * * * ** ** **
93672 GTGGATCGTTTTCAATATTTTAAACAACCAAAGTTATAAAAGATTTCGTAAAAGTTTGA-AGAGT
560 ATGGATCGTCTTGAATA-CTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGT
*
93736 TTGGAA
623 TCGGAA
* *
93742 GTTCGTCTCAGAACCAATAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTCAAGATCAAAAG
1 GTTCGTC-CAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGATCAAAAG
* * *
93807 TTGATAACAAAATGACAATA-ATTTAGACAAAACT-ATGCAATTTCCCGTGCATGGAATGTTCAA
65 TTGATAACAAAATGACAA-ACATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCAA
* * * * * * * *
93870 AAAATTGTTCAAAGGAATGAAACGTCTTGAATACTTTTTAA-GAAACAAAGTAATAAAGGATCTT
128 AAAATTGCTCGAAGGAATGGATCATCTTGAATA--TTTTAAGGAACCAAAGTTATAAAGGATCTC
* ** * *
93934 GTAAAAGTTTCACAAGTTCTTCAA-TTCGTCCAAGAGCCAAGAGAAACAATTCTCACGTAAATAC
191 GTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAA
* * * *
93998 GATTTTAATTCAAAGACCAAAACTTGTTTA-AAATACGACAAACTATTTAAACCAAATGATGCGA
255 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * *
94062 TTTCCCGAGAAAATTGCTTGAAGGAATAGACCGTCTTGAATACTTTATGGAACCAAAGTTATAAA
320 TTTCCCGAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAA
* * * *
94127 AGAACTCATAAAAGTTTGACAAGTTCGGATGTTCGTCCATGAACCAAGAGAGAAACAATTCTTAT
385 AGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-GAACCAAGAGAGAAACAATTCTCAC
* * * *
94192 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGATAACAAAATGACAAACCATTTAGACTAAAC
449 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGACAAACTATTTAGACCAAA-
* * * *
94257 T-ATGCGATTTTCTGAGCATGGAATGTTCGGAAAATTACTCGAAGGAATGAATCGTCTTGAATTC
513 TGATGCGATTTTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * *
94321 TTAAAGGAACTGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTTGAAA
578 TT-AAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* * * *
94373 GTTTGTCCAGGACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTAAATTCAAGATCAAAAGT
1 GTTCGTCCAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGATCAAAAGT
* ***
94438 TGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGATTTCCCGAGCATGGAATGTTTGGA
66 TGATAACAAAATGACAAAC-ATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCAAA
* ** * * * *
94502 AAATTGCTCGAAGGAGTGGATCATCTTGAAT-TCTTTAAGGAGTCGAAGTTATAAAAGAACTTGT
129 AAATTGCTCGAAGGAATGGATCATCTTGAATAT-TTTAAGGAACCAAAGTTATAAAGGATCTCGT
94566 AAAAGTTTGACAAGTTCGAAAGCTT-GTCTCAA-AACCAATAGAGAAACAATTCTCACGTAAATA
193 AAAAGTTTGACAAGTTCGAAAG-TTCGTC-CAAGAACC-A-AGAGAAACAATTCTCACGTAAATA
* * ** * *
94629 AGTTTTAAATTTAAAGAAAAAAAAATTTGTTTAGAAAAATGACAAACTA--TAGACCAAATGATG
254 AGTTTTTAATTCAAAG--ACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATG
* * * * *
94692 CGATTTCTTGTGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATTTTGAATACATTAA
317 CGATTTC-----C--CG-A-G-----AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
* * ** * * *
94757 GGAACCGAAGTTATAATAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTCATCCAAGAATCAAA
368 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAG
* * * * * * *
94822 AGAGAAACAATTTTCA-TTCAAATAAGCTTTTAATTCAAAGTCCAAAAGTTGATAAC-AAATGAA
432 AGAGAAACAATTCTCACGT-AAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGAC
* * * * * *
94885 AAACTATTTGGATCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAA
496 AAACTATTTAGACCAAATGATGCGATTTTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * *
94950 TGGATCGTCTTCAATATTTAAAGGAACAGAAGCTATAAAAGAAGTCGTAAAAGTTTAACAAGTTC
561 TGGATCGTCTTGAATACTT-AAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
95015 GGAA
625 GGAA
* *
95019 GTTCGTCTCAGAACCAATAGTGAAACAATTCTCATGTAAATAAGTTTTTAATTCAGAGA-C-AAA
1 GTTCGTC-CAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA-AGATCAAAA
* * * * ** *
95082 TTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTACGAGCATGGAATGTTCAG
64 GTTGATAACAAAATGACAAAC-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAA
* * * *
95147 AAAATAGCTTGAAGGAATGGATCGTCTTGAATACTTTAA-G-------G-TA-ACAA--A----G
128 AAAATTGCTCGAAGGAATGGATCATCTTGAATATTTTAAGGAACCAAAGTTATA-AAGGATCTCG
* * * * *
95196 TAAAAGTTTGATAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAGAAATAATTCTCACATAAAT
192 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC---A-AGAGAAACAATTCTCACGTAAAT
* ** * * * * * *
95261 TAGACTTTAATTCAAAGACCATAACATGTTTAC-AGAATGACAAAATATTTAGACAAAATGATTC
253 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGC
* * * * *
95325 AATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCAAAGAAATGGATAGTCTTGAATACTTTTAT
318 GATTT-CC---C---G-A-----G-AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTA-
* * * * ** ***
95390 A-GAACAAAAGTAATAAAGGATCTTATAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A
367 AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAA
* * * * *
95453 -AGATAAACAATTCTCATGTAAATACA-TTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGA
431 GAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGA
* *
95516 CAAACTATTTA-AGCCAAATGATGTGA-TTTCT---C---G-A-----G-AAAATTGCTTGAAGG
495 CAAACTATTTAGA-CCAAATGATGCGATTTTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
* * *
95566 AATGGATCGTTTTGAATACTTTATGGAACCGAAGTTATAAAA-AACTCGTAAAAGTTTGACAAGT
559 AATGGATCGTCTTGAATAC-TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* *
95630 TTGGAT
623 TCGGAA
* * * *
95636 GTTCGTCCATGAACCAA-AGGAGAAACAGTTCTCACGTAAATAAGTTTTTATTTCAAAGACCAAA
1 GTTCGTCCA-GAACCAAGA-GAGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAA
* * * * * * *
95700 AGTTGATAACAAAATGGCAAACTATTTAGACTAAACT-ATGTGATTTTCCAAGAATTGAATGTTC
63 AGTTGATAACAAAATGACAAAC-ATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTC
** * * * * * **
95764 GGAAAATTACTCAAAGGAATGGATCATCTTGAAT-TCTTTAAGGAATCGAAGTTATAAAAGAAGT
126 AAAAAATTGCTCGAAGGAATGGATCATCTTGAATAT-TTTAAGGAACCAAAGTTATAAAGGATCT
*
95828 CGTAAAAGTTTGAAAAGTTCGAAAGTTCGTCCAAGAACCAAGAGATAAACAATTCTCACGTAAAT
190 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG--AAACAATTCTCACGTAAAT
* * * * * ** * * *
95893 AAGTTTTTAATTC-AAGATCAAAAGTTGATAAC-AAAATGAAAAACTATACAAAACTATATGATT
253 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTAT-TTAGACCAAATGA--
*
95956 TTTCGAGCATGGAATGTT--CG-GAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGG
315 --T---GC---G-AT-TTCCCGAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * *
96018 AACCGAAGTTATAAAAGAACTCGTAAAGGTTTGACAACTTCGGAAGTTTGTCTCAGAACCAATAG
370 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAGAG
* * * * *
96083 AGAAACAATTCTCACGTAAATAAGTTTTTAACTCAAAAACAAAAAATTGTTTACAAAATGACAAA
434 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGACAAA
* * * * * * *
96148 CTGTTTAGACCAAATGATGC-AATTTCTTGTGCGTGGAAAGCTCGAAAAATTGCTTGAAGGAATG
499 CTATTTAGACCAAATGATGCGATTTTC-TGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATG
* * ** * *
96212 GATCGTCTTGAATACATTAATGAACCGAAGTTATAATCGAACTCGT-AATGTTTGACAAGTTTGG
563 GATCGTCTTGAATAC-TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG
96276 AA
627 AA
* * * *
96278 GTTCATCCAAGAACCAAGAGAGAAACAATTCGCACGCAAATAAGTTTTTAATTCAAAGA-CAAAA
1 GTTCGTCC-AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAAA
* *
96342 GTTGATAACAAAATGA-AAACCTATTTAGACCAAATGATGCGATTTCTCGGGCATGGAATGTTCA
64 GTTGATAACAAAATGACAAA-C-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * * *
96406 AAAAATTGCTCGAAGGAATGGATCAT-TTCAATATTTTAAGGAACCGAAGTTATAAAAGAAT-TA
127 AAAAATTGCTCGAAGGAATGGATCATCTTGAATATTTTAAGGAACCAAAGTTAT-AAAGGATCTC
* * * ** * * * *
96469 GTAAAAGTTTAACAAGTTTGGAAGTTCGTCTTAGAACAAGTAGAGAAAAAATTCTCTCGTAAAAA
191 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA--AGAGAAACAATTCTCACGTAAATA
* * **
96534 AGTTTTTAATTCAAAGACAAAAATTTGTTTAC-TGAATGACAAACTATTTAGACCAAATGATGCG
254 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
96598 ATTTCTTGTGCATGGAATGGTTGGAAAATTGCTC-AAGGAAATGTATCGTCTTGAATACATTAAG
319 ATTTC-----C--CG-A------GAAAATTGCTCGAAGG-AATGGATCGTCTTGAATACTTTAAG
* * **
96662 GAACCGAAGTTA-AAACGAAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAG
369 GAACCAAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAG
* * **
96726 AGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAACA-CACAAACTTTTTTACAAAATGAC
432 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGATTACAAAATGAC
* * *
96790 AAACTATTTAGACCGAATGATGC-AATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGA
496 AAACTATTTAGACCAAATGATGCGATTTTC-TGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA
*
96854 ATGGATCGTCTTGAATACTT-------T-AAG--ATAACA-AA---GTAAAAGTTTGACAAGTTC
560 ATGGATCGTCTTGAATACTTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
96905 GGAA
625 GGAA
* *
96909 GTTCGTCTAGAACCAAGAGAGAAACAATTCTCATGTAAATGAGTTTTTAATTCAA-AGTCTAAAA
1 GTTCGTCCAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGA-TC-AAAA
** ** * * * * * * * **
96973 CATCTTTACGAAATGACAAACTATTTAGACAAAATGATTCAATTTCTCGAGCATTGAATGTTGGG
64 GTTGATAACAAAATGACAAAC-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTT-CA
* * * * *
97038 AAAAATT-TTTGAAGG-ATGGATCATCTTGGAA-ACTTTTAAAGAGCCAAAGTAATAAAGGATCT
127 AAAAATTGCTCGAAGGAATGGATCATCTT-GAATA-TTTTAAGGAACCAAAGTTATAAAGGATCT
* **
97100 CGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCAAGAGAAACAATTCTCACGTAAATA
190 CGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-CCAAGAGAAACAATTCTCACGTAAATA
* * * * *
97165 AGTTTTTAATTCAAAGACCAAAACTTGTTTA-GAAAATGACAAACTATTTAAATCAAATGAAGCT
254 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCG
* * * * * *
97229 ATTTCCCGAGAAAATTTCTCGAAGGAATGCATAGTCTTAAATACTCTAAGGAACCAAAGTTATGA
319 ATTTCCCGAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * * *
97294 AAGAACTAGTAAAAGTTTGACAAGTTTGGAAGTTCATCCCAAAACCAATAGAGAAACAATTCTCA
384 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAGAACCAAGAGAGAAACAATTCTCA
* * *
97359 CGTTAA-AAGTTTTTAATTTAAAGACCAAAACCT-ATTTACAAAATGACAAACTATTTAGACCAA
448 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGA-TTACAAAATGACAAACTATTTAGACCAA
* **
97422 ATGATTCGATTACCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
512 ATGATGCGATTTTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAT-
* * * * * * *
97487 ATTTAAGGAGCTGCAA--TATAAAGGAACTCATAAAAGTTTGATAGGTTCGAAA
576 ACTTAAGGAACTG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
* *
97539 GTTTGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGA-CACTA
1 GTTCGTCC-AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATCA-AA
* ** * * ** * * *
97603 ACTTTTTTACAAAATGACAAACTATTTAAACCAAATGATTTGATTTCACGAGAATGGAATGTTCG
63 AGTTGATAACAAAATGACAAAC-ATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
* * ** * * *
97668 AAAAATTACTCGAAGGAATTGAT-AGTCTTGAATACATTAATGAACCAAAGTTATAACGGAACTC
127 AAAAATTGCTCGAAGGAATGGATCA-TCTTGAATATTTTAAGGAACCAAAGTTATAAAGGATCTC
* * * * *
97732 GTAAAAGTTTGACAAGTTCAAAAGTTTGTCCAAGACCCAAGAGGGAAACAATTCTCATGCAAATA
191 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGA--GAAACAATTCTCACGTAAATA
* * * * * *
97797 AGTTTTTAATTCTAAGA-CAAAAGTTGATAAC-AAAATGAAAAACTATTTAGACCAAATGATGTG
254 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCG
*
97860 ATTTCTCGAG
319 ATTTCCCGAG
97870 CATGGAATGT
Statistics
Matches: 3911, Mismatches: 628, Indels: 484
0.78 0.13 0.10
Matches are distributed among these distances:
616 106 0.03
617 177 0.05
618 58 0.01
619 90 0.02
620 2 0.00
623 1 0.00
624 3 0.00
625 2 0.00
626 57 0.01
627 102 0.03
628 135 0.03
629 16 0.00
630 230 0.06
631 702 0.18
632 258 0.07
633 112 0.03
634 53 0.01
635 17 0.00
636 8 0.00
637 6 0.00
638 3 0.00
639 1 0.00
640 98 0.03
641 109 0.03
642 209 0.05
643 71 0.02
644 86 0.02
645 377 0.10
646 246 0.06
647 269 0.07
648 145 0.04
649 96 0.02
650 63 0.02
652 2 0.00
653 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (628 bp):
GTTCGTCCAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGATCAAAAGT
TGATAACAAAATGACAAACATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAA
ATTGCTCGAAGGAATGGATCATCTTGAATATTTTAAGGAACCAAAGTTATAAAGGATCTCGTAAA
AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
GAGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT
CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAAAACTTGATTACAAAATGACAAACTATTTAGACCAAATGATGCGA
TTTTCTGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTAAGGAA
CTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAA
Found at i:95342 original size:203 final size:199
Alignment explanation
Indices: 94996--97043 Score: 517
Period size: 216 Copynumber: 9.8 Consensus size: 199
94986 AAAAGAAGTC
* * * **
94996 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCTCAGAACCAATAGTGAAACAATTCTCATGTAAATA
1 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATA
** * ** * * *
95061 AGTTTTTAATTCAGAGACAAATTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGTGATT
66 AGACTTTAATTCAAAGACAAACATGTTCACAAAATGACAAAATATTTAGACAAAATGATGTAATT
* * * *
95126 TTACGAGCATGGAATGTTC-AGAAAATAGCTT-GAAGGAATGGATCGTCTTGAATACTTTAAGGT
131 TCACGAGCATGGAATGTTCGA-AAAATAG-TTCAAAGAAATGGATAGTCTTGAATACTTTAAGGT
95189 AACAAA
194 AACAAA
* * *
95195 GTAAAAGTTTGATAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAGAAATAATTCTCACATAAA
1 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACC-A-AGAGAGAAACAATTCTCACATAAA
* * *
95260 TTAGACTTTAATTCAAAGACCATAACATGTTTACAGAATGACAAAATATTTAGACAAAATGAT-T
64 TAAGACTTTAATTCAAAGA-CA-AACATGTTCACAAAATGACAAAATATTTAGACAAAATGATGT
* *
95324 CAATTTCCCGAGCATGGAATGTTCGAAAAATTGTTCAAAGAAATGGATAGTCTTGAATACTTTTA
127 -AATTTCACGAGCATGGAATGTTCGAAAAATAGTTCAAAGAAATGGATAGTCTTGAATAC-TTTA
*
95389 TAGAACAAAAGTAATAAA
190 -AG-------GTAACAAA
* *** * * *
95407 GGATCTTATAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGATAAACAATTCTCAT
1 -G------TAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCAC
* ** * * * * * *
95470 GTAAATACA-TTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATTTA-AGCCAA
59 ATAAATA-AGACTTTAATTCAAAGA-C-AAACATGTTCACAAAATGACAAAATATTTAGA-CAAA
* * * * * * *** * * *
95533 ATGATGTGATTTCTCGAG-A--AAATTGCTT-GAAGGAATGGATC---GTTTTGAATACTTTATG
120 ATGATGTAATTTCACGAGCATGGAA-TG-TTCGAA-AAATAGTTCAAAGAAATGGATAGTCT-TG
* ** * *
95591 GA-AC-CGAAGTTATAAAAAA
181 AATACTTTAAG--GTAACAAA
* * * * *
95610 CTCGTAAAAGTTTGACAAGTTTGGATGTTCGT-CCATGAACCAA-AGGAGAAACAGTTCTCACGT
1 ---GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCA-GAACCAAGA-GAGAAACAATTCTCACAT
** * * * * * *
95673 AAATAAGTTTTTATTTCAAAGACCAAA-AGTTGATAACAAAATGGCAAACTATTTAGACTAAACT
61 AAATAAGACTTTAATTCAAAGA-CAAACA--TGTTCACAAAATGACAAAATATTTAGAC-AAAAT
* * * * * * *
95737 -ATGTGATTTTC-CAAGAATTGAATGTTCGGAAAATTA-CTCAAAGGAATGGATCA-TCTTGAAT
122 GATGT-AATTTCACGAGCATGGAATGTTC-GAAAAATAGTTCAAAGAAATGGAT-AGTCTTGAAT
* *
95798 TCTTTAAGGAATCGAAGTTATAAAAGAA
184 ACTTT----AA--G--G---TAACA-AA
* * * *
95826 GTCGTAAAAGTTTGAA-AAGTTCGAAAGTTCGTCCAAGAACCAAGAGATAAACAATTCTCACGTA
1 ---GTAAAAGTTT-AACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATA
** * *
95890 AATAAGTTTTTAATTC-AAGATCAAA-AGTTGATAACAAAATGA-AAAACTA--T--ACAAAACT
62 AATAAGACTTTAATTCAAAGA-CAAACA--TGTTCACAAAATGACAAAA-TATTTAGACAAAA-T
* * ** * * * * * * *
95948 -ATATGATTTTTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCT
122 GATGTAATTTCACGAGCATGGAATGTTCGAAAAATAGTTCAAAGAAATGGATAGTCTTGAATACT
*
96012 TTAAGGAACCGAAGTTATAAAAGAA
187 TT----AA--G--G---TAACA-AA
* * * * * * *
96037 CTCGTAAAGGTTTGACAACTTCGGAAGTTTGTCTCAGAACCAATAGAGAAACAATTCTCACGTAA
1 ---GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAA
** * * * * * * *
96102 ATAAGTTTTTAACTCAAAAACAAAAAATTGTTTACAAAATGACAAACTGTTTAGACCAAATGATG
63 ATAAGACTTTAATTCAAAGAC-AAACA-TGTTCACAAAATGACAAAATATTTAGACAAAATGATG
* ** * * * * * * * *
96167 CAATTTCTTGTGCGTGGAAAGCTCGAAAAATTGCTT-GAAGGAATGGATCGTCTTGAATACATTA
126 TAATTTCACGAGCATGGAATGTTCGAAAAATAG-TTCAAAGAAATGGATAGTCTTGAATAC-TT-
*
96231 ATGAACCGAAGTTATAATCGAACTC
188 -T-AA--G--G---TAA-C-AA--A
* * * * * * **
96256 GT-AATGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCGCACGCAAATA
1 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATA
** * * * * **
96320 AGTTTTTAATTCAAAGACAAA-AGTTGATAACAAAATGA-AAACCTATTTAGACCAAATGATGCG
66 AGACTTTAATTCAAAGACAAACA--TGTTCACAAAATGACAAA-ATATTTAGACAAAATGATGTA
* * * * * * * * *
96383 ATTTCTCGGGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCA-T-TTCAATATTTTAAG
128 ATTTCACGAGCATGGAATGTTCGAAAAATAGTTCAAAGAAATGGAT-AGTCTTGAATACTTT---
*
96446 GAACCGAAGTTATAAAAGAATTA
189 -AA--G--G---T--AACAA--A
* ** * * * *
96469 GTAAAAGTTTAACAAGTTTGGAAGTTCGTCTTAGAA-CAAGTAGAGAAAAAATTCTCTCGTAAAA
1 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAG-AGAGAAACAATTCTCACATAAAT
** * * ** * * **
96533 AAGTTTTTAATTCAAAGACAAAAATTTGTTTACTGAATGACAAACTATTTAGACCAAATGATGCG
65 AAGACTTTAATTCAAAGACAAACA--TGTTCACAAAATGACAAAATATTTAGACAAAATGATGTA
** * * * * * * *
96598 ATTTCTTGTGCATGGAATGGTT-GGAAAATTGCTCAAGGAAATGTATCGTCTTGAATACATTAAG
128 ATTTCACGAGCATGGAAT-GTTCGAAAAATAGTTCAAAGAAATGGATAGTCTTGAATAC-TT---
*
96662 GAACCGAAGTTAAAACGAAA
188 TAA--G--G-T--AAC-AAA
* ** * * *
96682 CTCGTAAAAGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAA
1 ---GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAA
** * * * * * **
96747 ATAAGTTTTTAATTCAAACACACAAACTTTTTTACAAAATGACAAACTATTTAGACCGAATGATG
63 ATAAGACTTTAATTC-AA-AGACAAACATGTTCACAAAATGACAAAATATTTAGACAAAATGATG
* ** * * * * * *
96812 CAATTTCTTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
126 TAATTTCACGAGCATGGAATGTTCGAAAAATAGTTCAAAGAAATGGATAGTCTTGAATACTTTAA
*
96877 GATAACAAA
191 GGTAACAAA
* * ** *
96886 GTAAAAGTTTGACAAGTTCGGAAGTTCGT-CTAGAACCAAGAGAGAAACAATTCTCATGTAAATG
1 GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATA
** * * * * *
96950 AGTTTTTAATTCAAAGTCTAAAACATCTTTACGAAATGACAAACTATTTAGACAAAATGAT-TCA
66 AGACTTTAATTCAAAGAC--AAACATGTTCACAAAATGACAAAATATTTAGACAAAATGATGT-A
* * *
97014 ATTTCTCGAGCATTGAATGTTGGGAAAAAT
128 ATTTCACGAGCATGGAATGTT-CGAAAAAT
97044 TTTTGAAGGA
Statistics
Matches: 1466, Mismatches: 262, Indels: 240
0.74 0.13 0.12
Matches are distributed among these distances:
198 4 0.00
199 65 0.04
200 106 0.07
201 131 0.09
202 18 0.01
203 91 0.06
204 16 0.01
205 14 0.01
206 1 0.00
207 1 0.00
208 2 0.00
209 1 0.00
210 16 0.01
211 146 0.10
212 37 0.03
213 45 0.03
214 160 0.11
215 252 0.17
216 304 0.21
217 16 0.01
218 7 0.00
219 33 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (199 bp):
GTAAAAGTTTAACAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACATAAATA
AGACTTTAATTCAAAGACAAACATGTTCACAAAATGACAAAATATTTAGACAAAATGATGTAATT
TCACGAGCATGGAATGTTCGAAAAATAGTTCAAAGAAATGGATAGTCTTGAATACTTTAAGGTAA
CAAA
Found at i:95939 original size:416 final size:417
Alignment explanation
Indices: 92450--97904 Score: 4060
Period size: 416 Copynumber: 12.8 Consensus size: 417
92440 AAGTTGAGAT
* * * * *
92450 GTTCATCCATGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTCAAAGTCCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACAAAA
* * * * * * *
92515 GTTGATACCAAAATTACAAACTATTTAGACTAAACT-ATGCGATTTTCGAGTGTGGAATGTTTGG
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAA-TGATGTGA-TTTC---TG-CGAA------G
* * * * * * *
92579 AAAATTGCTTGAAGGAATGGATTGTCCTAAATTCTTTAAGGAATCAAAGTTATAAAAGAACTCGT
118 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCGT
* * *
92644 AAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACC-AAGAGAGAAACAATTCTCAAGTAAATAA
182 AAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAAG-GAGAAACAATTCTCACGTAAATAA
* * * * * *
92708 GTTTTTAATTC-AAGATCAAAAATTGATGATAAAATGACAAACAATTTAGACAAAACT-ATGTGA
245 GTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAA-TGATGTGA
* * * * * ** *
92771 TTTCCCGATCATGGAATGTTTGGAAAATTGCTCAAAGGAATGGATTGTCTTGAATTCTTTAAGGA
309 TTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
* *
92836 ACCGAAGTAATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAA
374 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAA
* * * *
92881 -TTTGTCTC-AGAACCAATAAAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAGACAAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAA
* * * *
92944 ATTTGTTTACAAAAATGACAAACTATTTAAACCAAATGATGCGATTTCTTATGCATGGAATGTTC
64 ACTTGTTAAC-AAAATGACAAACTATTTAGACCAAATGATGTGATTTC---TGC---GAA-----
* * * * *
93009 GAAAAATTGCTCAAAGCAATGGATCATCTTGAATACATTAAGGAATCGAAGTTA-AAACGAAACT
117 G-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA--AAACT
* * * *
93073 CGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACC-AAGAGAGAAACAATTCTCATGCAAA
179 CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAAG-GAGAAACAATTCTCACGTAAA
* * * * *
93137 TAAGCTTTTAATTCAAAGTCCAAAAGTTGATAACAAAATGAAAAACTA-CTAGGACCAAATGATG
242 TAAGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTA-GACCAAATGATG
* * * * *
93201 TGATTTCCCGAGCATGGAATGTT-TAGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTA
306 TGATTTTCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTA
* *
93265 TGGAACCGAAGTTATAAAAGTACTCGTAAAAGTTTGACAAGTTCGAAA
370 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* *
93313 GTTCATCTC-AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAA
* * * * *
93377 ATTTGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGGTTTCTTGTGCATGGAATGTTTG
64 ACTTGTTAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC---TGC---GAA------
* * * * * ** ***
93442 GAAAATTACTTGAAGGAATAGATCATCTTGAATACATTAAGGAACAAAAGTTATTACCGGAACTC
117 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TA-AAAAACTC
* * * *
93507 GTAAAAGTTTGACAAGTTCAGAAGTTCATCCGTGAACC-AAGAGAGAAATAATTCTCACGTAAAT
180 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAAG-GAGAAACAATTCTCACGTAAAT
* * * * **
93571 AAG---TT-ATTCATAGACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACTAAATGATAAG
243 AAGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTG
* * * * * * * * *
93632 ATTTCCCGAGCATGGAATGTTC-AGAAAATTACTCGAAAGAGTGGATCGTTTTCAATATTTTAAA
308 ATTTTCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAG
* * ** * *
93696 CAACCAAAGTTATAAAAGATTTCGTAAAAGTTTGA-AGAGTTTGGAA
372 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-AGTTCGAAA
* * *
93742 GTTCGTCTC-AGAACCAATAGAGAAACAATTCTCATGTAAAAAAGTTTTTAATTC-AAGATCAAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAA
* * * **
93805 AGTTGATAACAAAATGAC-AA-TAATTTAGACAAAACT-ATGCAATTTCCCGTGCATGGAATGTT
64 ACTTGTTAACAAAATGACAAACT-ATTTAGACCAAA-TGATGTGATTT--C-TGC---GAA-G--
* * * * * * * * *
93867 CAAAAAATTGTTCAAAGGAATGAAACGTCTTGAATACTTTTTAA-GAAACAAAGTAATAAAGGAT
118 ---AAAATTGCTCGAAGGAATGGATCGTCTTGAATAC--TTTAAGGAACCGAAGTTATAAA-AAA
* * ** *
93931 CTTGTAAAAGTTTCACAAGTTCTTCAA-TTCGTCCAAGAGCC-AA-GAGAAACAATTCTCACGTA
177 CTCGTAAAAGTTTGACAAGTTC-GGAAGTTCGTCC-AGAACCAAAGGAGAAACAATTCTCACGTA
* * * * * *
93993 AATACGATTTTAATTCAAAGACCAAAACTTGTTTA-AAATACGACAAACTATTTAAACCAAATGA
240 AATAAGTTTTTAATTCAAAGACCAAAAGTTGATTACAAA-ATGACAAACTATTTAGACCAAATGA
* * * * *
94057 TGCGA-TTTCC---C---G-A-----G-AAAATTGCTTGAAGGAATAGACCGTCTTGAATACTTT
304 TGTGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTT
* * * * *
94108 ATGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAT
369 AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * *
94157 GTTCGTCCATGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTAATTCAAAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAA
* * * * *
94222 GTTGATAACAAAATGACAAACCATTTAGACTAAACT-ATGCGATTTTCTGAGCATGGAATGTTCG
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAA-TGATGTGA-TTTCT--GC---GAA------
* * * * * *
94286 GAAAATTACTCGAAGGAATGAATCGTCTTGAATTCTTAAAGGAACTGAAGTTATAAAAGAACTCA
117 GAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCG
* * * * *
94351 TAAAAGTTTGACAAGTTTGAAAGTTTGTCCAGGACC-AAGAGAGAAACAATTCTCAAGTAAATAA
181 TAAAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACCAAAG-GAGAAACAATTCTCACGTAAATAA
* * * * *
94415 GTTTTAAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-ATGCGA
245 GTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAA-TGATGTGA
* * * * *
94478 TTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAGTGGATCATCTTGAATTCTTTAAGGA
309 TTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
** *
94543 GTCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGAAA
374 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * *
94587 GCTT-GTCTCAA-AACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTAAATTTAAAGAAAAA
1 G-TTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG---AC
* *
94650 AAAATTTGTTTAGA-AAAATGACAAACTA--TAGACCAAATGATGCGATTTCTTGTGCATGGAAT
61 AAAACTTG-TTA-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC---TGC---GAA-
* * * * *
94712 GTTCAAAAAATTGCTCAAAGGAATGGATCATTTTGAATACATTAAGGAACCGAAGTTATAATAGA
117 G-----AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA-AAA
** * * * * *
94777 ACTCGTAAAAGTTTGACAAGTTAAGAAGTTCATCCAAGAATCAAAAGAGAAACAATTTTCA-TTC
176 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAAAGGAGAAACAATTCTCACGT-
* * * * * *
94841 AAATAAGCTTTTAATTCAAAGTCCAAAAGTTGATAAC-AAATGAAAAACTATTTGGATCAAATGA
239 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGA
* * * *
94905 TGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTCAATA-TTT
304 TGTGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTT
* * * * *
94969 AAAGGAACAGAAGCTATAAAAGAAGTCGTAAAAGTTTAACAAGTTCGGAA
369 -AAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * *
95019 GTTCGTCTC-AGAACCAATAGTGAAACAATTCTCATGTAAATAAGTTTTTAATTCAGAGAC-AAA
1 GTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAA
* * *
95082 TTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTACGAGCATGGAATGTTCAG
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTT-C-TGC---G-A-----AG
* * *
95147 AAAATAGCTTGAAGGAATGGATCGTCTTGAATACTTT----AA--G--G---TAACAAA---GTA
118 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAACTCGTA
* * * *
95198 AAAGTTTGATAAGTTCGGAAGTTCGTCCCAGAACCAAGAGAGAGAAATAATTCTCACATAAATTA
183 AAAGTTTGACAAGTTCGGAAGTTCGT-CCAGAACCAA-AG-GAGAAACAATTCTCACGTAAATAA
** * ** * * * * *
95263 GACTTTAATTCAAAGACCATAACATGTTTACAGAATGACAAAATATTTAGACAAAATGAT-TCAA
245 GTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGT-GA
* * * *
95327 TTTCCCGAGCATGGAATGTTCGAAAAATTGTTCAAAGAAATGGAT-AGTCTTGAATACTTTTATA
309 TTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGAATAC-TTTA-A
** * * * ** ***
95391 -GAACAAAAGTAATAAAGGATCTTATAAAAGTTTGACAAGTTCTTCA
371 GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* *
95437 GTTCGTCCAAGAACC-A-AGATAAACAATTCTCATGTAAATACA-TTTTTAATTCAAAGACCAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGA-CAAA
* * * *
95499 ACTTGTTTAGAATATGACAAACTATTTA-AGCCAAATGATGTGATTTCT-CG-AGAAAATTGCTT
64 ACTTGTTAACAAAATGACAAACTATTTAGA-CCAAATGATGTGATTTCTGCGAAGAAAATTGCTC
* *
95561 GAAGGAATGGATCGTTTTGAATACTTTATGGAACCGAAGTTATAAAAAACTCGTAAAAGTTTGAC
128 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAACTCGTAAAAGTTTGAC
* * * *
95626 AAGTTTGGATGTTCGTCCATGAACCAAAGGAGAAACAGTTCTCACGTAAATAAGTTTTTATTTCA
193 AAGTTCGGAAGTTCGTCCA-GAACCAAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * *
95691 AAGACCAAAAGTTGATAACAAAATGGCAAACTATTTAGACTAAACT-ATGTGATTTTCCAAGAAT
257 AAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTTCCGAGCAT
* * * * * *
95755 TGAATGTTCGGAAAATTACTCAAAGGAATGGATCATCTTGAATTCTTTAAGGAATCGAAGTTATA
321 GGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATA
* *
95820 AAAGAAGTCGTAAAAGTTTGAAAAGTTCGAAA
386 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
*
95852 GTTCGTCCAAGAACCAAGAGATAAACAATTCTCACGTAAATAAGTTTTTAATTC-AAGATCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAA
* * * ** * * * *
95916 GTTGATAACAAAATGAAAAACTATACAAAACTATATGAT-T--TTTCGAGCATGGAATGTTCGGA
65 CTTGTTAACAAAATGACAAACTAT-TTAGACCAAATGATGTGATTTC-TGC---GAA------GA
*
95978 AAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCGTA
119 AAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCGTA
* * *
96043 AAGGTTTGACAACTTCGGAAGTTTGTCTCAGAACCAATA-GAGAAACAATTCTCACGTAAATAAG
183 AAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAG
* * * * * * * *
96107 TTTTTAACTCAAAAACAAAAAATTGTTTACAAAATGACAAACTGTTTAGACCAAATGATG-CAAT
246 TTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTGATT
* * * * * * * * *
96171 TTCTTGTGCGTGGAAAGCTCGAAAAATTGCTTGAAGGAATGGATCGTCTTGAATACATTAATGAA
311 TTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
** * * *
96236 CCGAAGTTATAATCGAACTCGT-AATGTTTGACAAGTTTGGAA
375 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * * *
96278 GTTCATCCAAGAACCAAGAGAGAAACAATTCGCACGCAAATAAGTTTTTAATTCAAAGACAAAAG
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAC
* *
96343 TTGATAACAAAATGA-AAACCTATTTAGACCAAATGATGCGATTTCTCGGGCATGGAATGTTCAA
66 TTGTTAACAAAATGACAAA-CTATTTAGACCAAATGATGTGATTTCT---GC---GAA-G-----
* * * * *
96407 AAAATTGCTCGAAGGAATGGATCAT-TTCAATATTTTAAGGAACCGAAGTTATAAAAGAATTAGT
118 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA-AACTCGT
* * * * * *
96471 AAAAGTTTAACAAGTTTGGAAGTTCGTCTTAGAA-C-AAGTAGAGAAAAAATTCTCTCGTAAAAA
182 AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAGAACCAAAG--GAGAAACAATTCTCACGTAAATA
* * * ** *
96534 AGTTTTTAATTCAAAGACAAAAATTTGTTTACTGAATGACAAACTATTTAGACCAAATGATGCGA
244 AGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* * * * * *
96599 -TTTCTTGTGCATGGAATGGTT-GGAAAATTGCTC-AAGGAAATGTATCGTCTTGAATACATTAA
309 TTTTC-CGAGCATGGAAT-GTTCGAAAAATTGCTCGAAGG-AATGGATCATCTTGAATACTTTAA
* *
96661 GGAACCGAAGTTA-AAACGAAACTCGTAAAAGTTTGACAAGTTCAAAA
371 GGAACCGAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCGAAA
* *
96708 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTAATTCAAACACACAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA-AAA
* * * **
96773 CTTTTTTACAAAATGACAAACTATTTAGACCGAATGATGCAATTTCTTGAGCATGGAATGTTCAA
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC-T--GC---GAA-G-----
*
96838 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT---------AAG--ATAACAAA---GTA
118 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAACTCGTA
* * *
96889 AAAGTTTGACAAGTTCGGAAGTTCGTCTAGAACC-AAGAGAGAAACAATTCTCATGTAAATGAGT
183 AAAGTTTGACAAGTTCGGAAGTTCGTCCAGAACCAAAG-GAGAAACAATTCTCACGTAAATAAGT
* * ** ** * * * *
96953 TTTTAATTCAAAGTCTAAAACATCTTTACGAAATGACAAACTATTTAGACAAAATGAT-TCAATT
247 TTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT
* * * * *
97017 TCTCGAGCATTGAATGTTGGGAAAAATT-TTTGAAGG-ATGGATCATCTTGGAA-ACTTTTAAAG
312 TC-CGAGCATGGAATGTT-CGAAAAATTGCTCGAAGGAATGGATCATCTT-GAATAC-TTTAAGG
* * * * * * **
97079 AGCCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAA
373 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
*
97124 GTTCGTCCAAGAACCCA-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAA
* * * * * * *
97188 CTTGTTTAGAAAATGACAAACTATTTAAATCAAATGAAGCT-ATTTC-CCG-AGAAAATTTCTCG
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTCTGCGAAGAAAATTGCTCG
* * * * * * *
97250 AAGGAATGCATAGTCTTAAATACTCTAAGGAACCAAAGTTATGAAAGAACTAGTAAAAGTTTGAC
129 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAAACTCGTAAAAGTTTGAC
* * * * *
97315 AAGTTTGGAAGTTCATCCCAAAACCAATA-GAGAAACAATTCTCACGTTAA-AAGTTTTTAATTT
193 AAGTTCGGAAGTTCGT-CCAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
** *
97378 AAAGACCAAAACCT-ATTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGA-TTACCTGAG
256 AAAGACCAAAAGTTGA-TTACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTTCC-GAG
* * * *
97440 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAGCTGCAA--
318 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCG-AAGT
* * * *
97503 TATAAAGGAACTCATAAAAGTTTGATAGGTTCGAAA
382 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
* * *
97539 GTTTGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACACTAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA-AAA
* * * *
97604 CTTTTTTACAAAATGACAAACTATTTAAACCAAATGATTTGATTTCACGAGAATG-GAATGTTCG
65 CTTGTTAACAAAATGACAAACTATTTAGACCAAATGATGTGATTT--C-----TGCGAA-----G
* * * * * * **
97668 AAAAATTACTCGAAGGAATTGATAGTCTTGAATACATTAATGAACCAAAGTTATAACGGAACTCG
118 -AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA-AAAACTCG
** * * * *
97733 TAAAAGTTTGACAAGTTCAAAAGTTTGTCCAAGACCCAAGAGG-GAAACAATTCTCATGCAAATA
181 TAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AGAACCAA-AGGAGAAACAATTCTCACGTAAATA
* * *
97797 AGTTTTTAATTCTAAGA-CAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTGA
244 AGTTTTTAATTCAAAGACCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTGA
97861 -TTTCTCGAGCATGGAATGTTC-AAAAAGTTGCTCGAAGGAATGGA
309 TTTTC-CGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGA
97905 AAGATGCGAG
Statistics
Matches: 4131, Mismatches: 639, Indels: 509
0.78 0.12 0.10
Matches are distributed among these distances:
401 32 0.01
404 37 0.01
406 1 0.00
407 1 0.00
408 3 0.00
410 4 0.00
411 2 0.00
412 3 0.00
413 4 0.00
414 39 0.01
415 340 0.08
416 672 0.16
417 315 0.08
418 129 0.03
419 6 0.00
420 4 0.00
421 7 0.00
422 3 0.00
423 6 0.00
424 2 0.00
425 39 0.01
426 155 0.04
427 285 0.07
428 66 0.02
429 513 0.12
430 475 0.11
431 245 0.06
432 435 0.11
433 304 0.07
434 3 0.00
435 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (417 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAC
TTGTTAACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGCGAAGAAAATTGCTCGAA
GGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAAACTCGTAAAAGTTTGACAAG
TTCGGAAGTTCGTCCAGAACCAAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTGATTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCCGAGCATGGAAT
GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTTCGAAA
Found at i:102281 original size:24 final size:24
Alignment explanation
Indices: 102249--102303 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
102239 GAGAGTTCTT
*
102249 AAGAGGAAAATGAAAATGAAAAAC
1 AAGAAGAAAATGAAAATGAAAAAC
*
102273 AAGAAGAAAATGAAAATGAAAAAG
1 AAGAAGAAAATGAAAATGAAAAAC
102297 AAGAAGA
1 AAGAAGA
102304 TACCCATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.69, C:0.02, G:0.22, T:0.07
Consensus pattern (24 bp):
AAGAAGAAAATGAAAATGAAAAAC
Found at i:102297 original size:18 final size:18
Alignment explanation
Indices: 102254--102298 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
102244 TTCTTAAGAG
*
102254 GAAAATGAAAATGAAAAA
1 GAAAAAGAAAATGAAAAA
* * *
102272 CAAGAAGAAAATGAAAAT
1 GAAAAAGAAAATGAAAAA
102290 GAAAAAGAA
1 GAAAAAGAA
102299 GAAGATACCC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.71, C:0.02, G:0.18, T:0.09
Consensus pattern (18 bp):
GAAAAAGAAAATGAAAAA
Found at i:107336 original size:24 final size:24
Alignment explanation
Indices: 107309--107357 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
107299 TCTCAATAGA
107309 AAAAAGAAAATGAAAAACAAGAAG
1 AAAAAGAAAATGAAAAACAAGAAG
*
107333 AAAAAGAATATGAAAAACAAGAAG
1 AAAAAGAAAATGAAAAACAAGAAG
107357 A
1 A
107358 TACCCATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.06
Consensus pattern (24 bp):
AAAAAGAAAATGAAAAACAAGAAG
Found at i:107744 original size:18 final size:17
Alignment explanation
Indices: 107721--107755 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
107711 AAAAATCAAG
107721 ATTCACTTTCTTGATTTT
1 ATTCACTTTCTTG-TTTT
107739 ATTCACTTTCTTGTTTT
1 ATTCACTTTCTTGTTTT
107756 CAAAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.14, C:0.17, G:0.06, T:0.63
Consensus pattern (17 bp):
ATTCACTTTCTTGTTTT
Found at i:109622 original size:74 final size:70
Alignment explanation
Indices: 109493--109638 Score: 213
Period size: 74 Copynumber: 2.0 Consensus size: 70
109483 TGGAGGGATA
*
109493 CAATGTTTCGTTCAAGAGTTTTTAAATGAACACATTCATTTATGAATGATGAATGATGG-TAGTT
1 CAATGTTTCATTCAAGAGTTTTTAAATGAACACATTCATTTATGAATGATGAATGATGGCT-GTT
109557 CACATT
65 CACATT
*
109563 CAATGTTTCATTCAAGTGTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGCT
1 CAATGTTTCATTCAAGAGTTTTTAAATG----AACACATTCATTTATGAATGATGAATGATGGCT
*
109628 GTTCACTTT
62 GTTCACATT
109637 CA
1 CA
109639 TTTTGTAACA
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
70 26 0.38
74 41 0.60
75 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (70 bp):
CAATGTTTCATTCAAGAGTTTTTAAATGAACACATTCATTTATGAATGATGAATGATGGCTGTTC
ACATT
Done.