Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010488.1 Kokia drynarioides strain JFW-HI SEQ_125394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1258
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39


Found at i:120 original size:20 final size:19

Alignment explanation


    Indices: 97--137  Score: 57
    Period size: 20  Copynumber: 2.1  Consensus size: 19

         87 AAATTAAAAG

                                 
         97 TTATTT-TTTAATTTAATATA
          1 TTATTTATTT-ATTTAAT-TA

                               
        117 TTATTTATTTATTTAATTA
          1 TTATTTATTTATTTAATTA

              
        136 TT
          1 TT

        138 TTCCACATGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  19    4  0.20
  20   13  0.65
  21    3  0.15

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (19 bp):   
TTATTTATTTATTTAATTA
Done.