genome.fa.s10491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010491.1 Kokia drynarioides strain JFW-HI SEQ_125399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121634

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2002--2062	31	2.0	31	100	0	122	31	19	19	29	1.97
2044--2087	23	1.9	23	95	0	79	38	18	13	29	1.89
17666--17721	27	2.1	27	96	0	103	39	25	21	14	1.91
23202--23270	23	2.9	24	84	2	95	27	13	15	43	1.84
23202--23289	23	3.8	23	82	10	90	29	12	17	40	1.86
23255--23301	23	2.0	23	84	8	60	38	10	17	34	1.84
25407--25434	2	14.0	2	100	0	56	50	0	0	50	1.00
32324--32376	22	2.4	22	96	0	97	20	18	18	41	1.91
35693--35767	20	3.7	20	71	20	57	56	10	13	20	1.66
36577--36633	20	2.8	20	71	5	53	54	5	22	17	1.63
36617--36680	20	3.2	20	74	12	69	57	9	18	14	1.63
36572--36718	79	1.9	79	81	2	179	53	9	19	18	1.71
36557--36721	40	4.2	39	73	7	127	55	8	18	17	1.67
42712--42750	19	2.1	19	90	4	62	38	0	5	56	1.22
42705--42750	19	2.3	20	82	14	60	36	0	6	56	1.25
58482--58515	2	17.0	2	100	0	68	50	0	0	50	1.00
59114--59159	18	2.5	18	85	3	56	30	2	0	67	1.03
59828--59874	22	2.0	24	84	8	62	51	2	0	46	1.13
61195--61451	132	1.9	132	96	0	478	48	14	13	23	1.79
64395--64496	25	4.0	25	74	6	98	31	21	18	28	1.97
64382--64494	50	2.2	52	76	4	124	32	20	18	28	1.96
67652--67767	27	4.4	27	76	8	114	37	23	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67661--67771	54	2.1	54	84	6	145	37	21	15	25	1.92
71370--71399	15	2.0	15	100	0	60	46	13	20	20	1.83
72249--72300	25	2.1	25	92	0	86	34	25	15	25	1.95
75864--75920	25	2.3	25	87	0	78	36	24	8	29	1.86
78023--78126	25	4.1	25	82	2	118	31	25	17	25	1.97
78037--78218	27	6.9	27	76	9	135	35	22	14	27	1.94
78078--78231	27	5.8	27	79	5	143	35	22	13	27	1.92
78078--78231	54	2.9	54	78	5	170	35	22	13	27	1.92
79933--80001	27	2.6	27	83	4	86	18	24	15	40	1.90
82859--82910	21	2.5	20	71	6	50	11	13	5	69	1.35
90480--90563	30	2.7	31	76	10	91	17	13	15	53	1.73
91867--91901	18	1.9	18	88	0	52	62	0	0	37	0.95
92375--92498	62	2.0	62	100	0	248	35	20	9	33	1.86
96671--96699	4	7.2	4	100	0	58	27	0	48	24	1.51
97260--97388	40	3.2	40	65	8	116	35	8	12	43	1.73
97251--97417	82	2.0	82	98	0	325	36	8	12	42	1.73
102130--102370	129	1.9	128	81	2	295	32	19	24	23	1.98
105862--106135	103	2.7	102	88	3	403	29	27	10	31	1.91
106938--106969	10	3.3	10	91	8	57	81	0	0	18	0.70
106937--106971	15	2.3	15	90	9	54	80	0	0	20	0.72
112067--112133	6	10.7	6	90	6	98	83	1	0	14	0.72
112066--112133	13	5.3	13	87	10	104	83	1	0	14	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112066--112133	32	2.1	32	91	5	111	83	1	0	14	0.71
116213--116261	12	4.1	12	79	10	55	2	34	0	63	1.06
119145--119216	6	12.3	6	72	11	60	41	1	2	54	1.23
119112--119217	35	3.0	35	82	9	110	39	0	5	53	1.31
119112--119216	17	6.0	17	82	7	86	39	0	5	54	1.31
119180--119215	11	3.2	11	88	7	54	44	0	2	52	1.15
119878--119902	3	8.3	3	100	0	50	64	0	0	36	0.94
119901--119939	3	13.0	3	100	0	78	33	0	0	66	0.92
120237--120366	65	2.0	65	84	3	172	21	26	37	14	1.92
120979--121259	30	9.5	30	77	9	247	36	26	2	33	1.71
120979--121204	59	3.8	58	83	3	247	36	27	3	32	1.73
120979--121300	30	10.9	30	75	10	234	35	27	4	32	1.76
120979--121287	89	3.5	87	80	6	266	35	27	3	33	1.74
121003--121259	59	4.3	59	81	6	243	36	27	2	33	1.70
121244--121335	29	3.2	29	68	11	80	32	29	8	29	1.87

Tables:   1

The End!