genome.fa.s10495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010495.1 Kokia drynarioides strain JFW-HI SEQ_125405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56267

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534--621	15	5.8	15	73	12	63	57	9	2	30	1.42
1649--2107	30	15.6	30	76	13	400	32	31	4	31	1.77
1649--2114	59	7.9	58	86	5	555	32	31	4	31	1.78
1649--2113	29	15.8	30	76	16	214	32	32	4	31	1.77
2329--2510	96	1.9	96	84	6	244	28	20	14	35	1.93
6234--6378	57	2.7	50	75	17	139	49	4	17	27	1.67
6234--6362	57	2.2	56	85	8	170	51	4	17	27	1.65
6340--6365	13	2.0	13	100	0	52	69	0	15	15	1.20
12104--12149	20	2.3	21	82	17	55	47	4	2	45	1.34
16294--16651	53	6.6	53	84	4	421	29	14	20	35	1.92
16294--16590	105	2.8	105	89	0	441	28	15	21	35	1.93
16294--16651	158	2.2	159	83	5	430	29	14	20	35	1.92
18899--19063	38	4.4	38	80	1	161	24	27	17	30	1.97
18899--19068	19	9.0	19	77	3	146	24	26	17	31	1.97
22051--22140	23	3.9	23	85	8	112	44	20	21	14	1.86
22038--22161	45	2.7	46	82	7	135	42	20	24	12	1.87
22039--22161	22	5.4	22	80	11	122	42	20	24	13	1.87
22037--22161	23	5.5	22	80	8	106	43	20	24	12	1.86
25189--25229	18	2.2	19	83	12	50	26	12	21	39	1.89
25790--26008	44	5.1	41	83	6	181	25	29	11	33	1.91
25790--26016	43	5.3	43	82	5	239	25	28	11	33	1.91
25830--26016	87	2.2	86	81	4	216	25	29	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34369--34426	19	2.9	20	80	10	57	58	5	3	32	1.37
34366--34426	20	3.1	19	79	11	61	57	4	3	34	1.36
37062--37146	19	4.2	20	79	11	77	57	5	0	36	1.23
39021--39089	10	7.1	10	69	12	54	33	2	1	62	1.19
39014--39119	28	3.8	28	76	12	94	34	1	2	60	1.22
39022--39083	18	3.3	18	84	10	79	30	3	1	64	1.19
39021--39087	19	3.5	19	82	10	82	32	2	1	62	1.19
39019--39089	20	3.6	20	75	16	67	33	2	1	61	1.19
39044--39128	19	4.7	19	75	19	67	35	0	3	61	1.13
53654--54031	135	2.9	130	79	9	432	17	16	22	42	1.89
53792--54021	123	1.9	123	87	3	338	16	16	23	43	1.87
55360--55390	6	5.2	6	100	0	62	48	19	0	32	1.49
56237--56267	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!