Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010500.1 Kokia drynarioides strain JFW-HI SEQ_125411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5856
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:323 original size:65 final size:64

Alignment explanation


    Indices: 219--347  Score: 240
    Period size: 65  Copynumber: 2.0  Consensus size: 64

        209 TCTACCTCTC

                                   *                                        
        219 ATCATCGACTGTTTACAAGATCGGTGTAAAACCAATTCGAAACTCCCTTTTATGTCACGGTCCA
          1 ATCATCGACTGTTTACAAGATCGATGTAAAACCAATTCGAAACTCCCTTTTATGTCACGGTCCA

                                                                             
        283 NATCATCGACTGTTTACAAGATCGATGTAAAACCAATTCGAAACTCCCTTTTATGTCACGGTCCA
          1 -ATCATCGACTGTTTACAAGATCGATGTAAAACCAATTCGAAACTCCCTTTTATGTCACGGTCCA

        348 TCGCGAGCTC


Statistics
Matches: 63,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  65   63  1.00

ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29


Consensus pattern (64 bp):   
ATCATCGACTGTTTACAAGATCGATGTAAAACCAATTCGAAACTCCCTTTTATGTCACGGTCCA
Done.