Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010503.1 Kokia drynarioides strain JFW-HI SEQ_125414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3920
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:2083 original size:23 final size:22

Alignment explanation


    Indices: 2054--2126  Score: 74
    Period size: 23  Copynumber: 3.2  Consensus size: 22

       2044 ACAGTAAGCA

                   *             * 
       2054 CACATAGTGCAATCCAATAGGTG
          1 CACATAGCGCAAT-CAATAGGCG

                            *      
       2077 CACATAGCGCAAATCAGTAGGCG
          1 CACATAGCGC-AATCAATAGGCG

                            *     *
       2100 CACATAGCGCAAATCAGTAGGCA
          1 CACATAGCGC-AATCAATAGGCG

                
       2123 CACA
          1 CACA

       2127 AGGTGCGAAA


Statistics
Matches: 45,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  23   42  0.93
  24    3  0.07

ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15


Consensus pattern (22 bp):   
CACATAGCGCAATCAATAGGCG

Found at i:2141 original size:23 final size:23

Alignment explanation


    Indices: 2110--2167  Score: 73
    Period size: 23  Copynumber: 2.5  Consensus size: 23

       2100 CACATAGCGC

                     *               
       2110 AAATCAGTAGGCACAC-AAGGTGCG
          1 AAAT-AGTAAGCACACGAA-GTGCG

                                   
       2134 AAATAGTAAGCACACGAAGTGCG
          1 AAATAGTAAGCACACGAAGTGCG

               *       
       2157 AAACAGTAAGC
          1 AAATAGTAAGC

       2168 GTGCTTGCAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  23   25  0.81
  24    6  0.19

ACGTcount: A:0.43, C:0.19, G:0.26, T:0.12


Consensus pattern (23 bp):   
AAATAGTAAGCACACGAAGTGCG
Done.