Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010504.1 Kokia drynarioides strain JFW-HI SEQ_125415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1237
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:74 original size:45 final size:45

Alignment explanation


    Indices: 1--117  Score: 180
    Period size: 45  Copynumber: 2.6  Consensus size: 45

                 *  *           **                       
          1 AAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGGTGGCTCGTC
          1 AAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGGTGGCTCGTC

               *                                   *     
         46 AAATTGAGGCTGATATCCTTGGCTTGAGTATTGCGGTGGGTCGTC
          1 AAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGGTGGCTCGTC

                                       
         91 AAACTGAGGCTGATATCCTTGGCTTGA
          1 AAACTGAGGCTGATATCCTTGGCTTGA

        118 TGAGCTACGC


Statistics
Matches: 65,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  45   65  1.00

ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32


Consensus pattern (45 bp):   
AAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGGTGGCTCGTC
Done.