genome.fa.s10505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010505.1 Kokia drynarioides strain JFW-HI SEQ_125416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109015

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6158--6211	27	2.0	27	88	0	81	18	0	16	64	1.29
6177--6215	20	1.9	21	94	5	71	15	0	15	69	1.20
6352--6405	24	2.3	22	79	17	56	25	5	1	66	1.23
6635--6686	25	2.0	26	88	3	79	44	0	1	53	1.11
6635--6699	25	2.5	24	82	12	67	46	0	1	52	1.10
8273--8364	45	2.0	45	93	0	157	39	21	11	27	1.89
9084--9192	26	4.2	26	93	0	182	24	3	11	59	1.48
9201--9276	14	5.4	14	77	14	68	23	5	31	39	1.77
9188--9277	28	3.2	28	78	9	103	21	5	33	40	1.76
9188--9283	7	13.7	7	71	4	59	20	5	32	41	1.75
9215--9283	21	3.3	21	80	8	77	21	4	31	42	1.73
11429--11560	39	3.4	39	87	0	192	20	33	15	30	1.94
11557--11613	27	2.1	27	93	0	96	24	31	17	26	1.97
21616--21675	25	2.4	25	94	0	102	33	26	15	25	1.95
23486--23533	21	2.3	21	96	0	87	20	14	22	41	1.89
23577--23645	21	3.3	20	76	11	59	26	11	27	34	1.91
34923--35064	71	2.0	72	88	4	216	33	14	19	32	1.92
38166--38210	22	2.0	22	100	0	90	51	4	13	31	1.61
42199--42244	15	2.8	17	80	9	60	21	4	10	63	1.44
49423--49486	29	2.2	30	80	8	69	43	3	3	50	1.33
53060--53120	9	7.0	9	80	10	56	45	9	1	42	1.47
54341--54436	43	2.3	42	83	1	111	27	32	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54828--54961	66	2.0	66	82	2	162	13	27	18	40	1.88
60396--60459	22	3.0	22	90	2	103	10	20	25	43	1.84
60439--60508	24	2.8	25	93	2	115	14	31	15	38	1.88
62157--62240	22	3.8	22	95	0	141	15	23	22	38	1.92
65300--65416	16	7.5	16	69	12	55	51	0	7	41	1.31
65367--65402	8	4.5	8	96	0	63	61	0	8	30	1.26
65266--65458	77	2.7	70	82	12	244	45	0	8	45	1.38
65298--65453	77	2.0	77	92	0	258	48	0	7	44	1.31
65391--65486	38	2.5	36	80	12	104	41	0	7	51	1.30
69011--69041	2	15.5	2	93	0	53	48	51	0	0	1.00
70329--70501	41	4.2	41	77	4	170	21	24	15	37	1.93
70322--70501	82	2.2	81	78	4	191	21	25	15	37	1.93
82052--82077	7	3.7	7	100	0	52	53	0	30	15	1.42
82734--82792	31	1.9	32	82	6	77	33	3	0	62	1.12
87541--87690	22	6.8	22	75	2	113	35	19	23	22	1.96
87578--87690	44	2.6	44	76	0	136	34	20	23	21	1.97
87830--87862	17	1.9	17	88	11	50	39	21	0	39	1.53
91228--91258	16	1.9	16	93	0	53	16	6	0	77	0.97
91558--91602	12	3.7	12	79	5	54	24	2	4	68	1.19
93589--93622	17	2.0	17	100	0	68	47	5	11	35	1.65
98729--98797	34	2.0	34	91	0	111	44	2	33	18	1.65
102701--102767	34	2.0	34	96	0	125	43	2	35	17	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102701--102756	17	3.3	17	73	26	64	41	1	37	19	1.62
105964--106036	36	2.0	36	100	0	146	21	32	8	36	1.83

Tables:   1

The End!