Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010506.1 Kokia drynarioides strain JFW-HI SEQ_125417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10564
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:6351 original size:2 final size:2

Alignment explanation


    Indices: 6308--6340  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       6298 ATTCTAAATT

                  *                                          
       6308 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       6341 TGTTTATATA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA
Done.