Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010518.1 Kokia drynarioides strain JFW-HI SEQ_125430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8072
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:2762 original size:18 final size:18

Alignment explanation


    Indices: 2722--2763  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       2712 AGTTGTCATT

                            **
       2722 GCATTTTTATTTGTCTCT
          1 GCATTTTTATTTGTCTAA

                              
       2740 GCATTTTTATTTGT-TAA
          1 GCATTTTTATTTGTCTAA

                   
       2757 GTCATTT
          1 G-CATTT

       2764 GCATTGTCAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  17    2  0.10
  18   19  0.90

ACGTcount: A:0.17, C:0.12, G:0.12, T:0.60


Consensus pattern (18 bp):   
GCATTTTTATTTGTCTAA

Found at i:5881 original size:15 final size:17

Alignment explanation


    Indices: 5863--5900  Score: 53
    Period size: 15  Copynumber: 2.3  Consensus size: 17

       5853 AATTTCCTTC

                             
       5863 TTTTTCTTT-TC-TTTT
          1 TTTTTCTTTCTCATTTT

                             
       5878 TTTTTCTTTCTCATTTT
          1 TTTTTCTTTCTCATTTT

                  
       5895 TCTTTT
          1 T-TTTT

       5901 TCAAGTGACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    9  0.45
  16    2  0.10
  17    5  0.25
  18    4  0.20

ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82


Consensus pattern (17 bp):   
TTTTTCTTTCTCATTTT
Done.