Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010521.1 Kokia drynarioides strain JFW-HI SEQ_125433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3643
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:1999 original size:21 final size:21

Alignment explanation


    Indices: 1973--2013  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1963 TAGGGTCCAT

                     *   *       
       1973 TTGCCCCGGTGGAGTAGAGTC
          1 TTGCCCCGGAGGAATAGAGTC

                  *             
       1994 TTGCCCGGGAGGAATAGAGT
          1 TTGCCCCGGAGGAATAGAGT

       2014 ATCGTGATGA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.20, C:0.20, G:0.39, T:0.22


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTC
Done.