Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010523.1 Kokia drynarioides strain JFW-HI SEQ_125436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107489
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 69 characters in sequence are not A, C, G, or T
Found at i:35 original size:23 final size:22
Alignment explanation
Indices: 4--61 Score: 53
Period size: 25 Copynumber: 2.5 Consensus size: 22
1 GTA
* *
4 CTCTTTGTTTAGCACTGTGTGTG
1 CTCTCTGTTTAGCACT-TATGTG
*
27 CTCTCTGTTGCCCAGCACTTATGTG
1 CTCTCTGTT---TAGCACTTATGTG
52 CTCTCTGTTT
1 CTCTCTGTTT
62 GTTCCGTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
23 8 0.29
25 14 0.50
26 6 0.21
ACGTcount: A:0.09, C:0.26, G:0.21, T:0.45
Consensus pattern (22 bp):
CTCTCTGTTTAGCACTTATGTG
Found at i:1008 original size:4 final size:4
Alignment explanation
Indices: 1001--1027 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
991 NNNNAAAAAA
1001 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1028 AAGTCAAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:3028 original size:98 final size:98
Alignment explanation
Indices: 2924--3333 Score: 577
Period size: 98 Copynumber: 4.2 Consensus size: 98
2914 TAGATGAGAT
* * * * * *
2924 GGGAAAGATTTAAGCTGCAATGGTGAATCTAGTACCACGAAGATATGGAGGGAAAGATTTAAGTT
1 GGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTC
*
2989 GCAATGGCGAACCTTGTACCTCAGAAACATGAA
66 GCAACGGCGAACCTTGTACCTCAGAAACATGAA
* *
3022 GGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACAAAGATATGGAGGGAAAGTTTTAAGTC
1 GGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTC
* *
3087 GCAACAGTGAACCTTGTACCTCAGAAACATGAA
66 GCAACGGCGAACCTTGTACCTCAGAAACATGAA
* * * *
3120 GGGAAAGATTTAAGTCGCAACGGCGAATCTACTACCACGAAGATATGGAGGATAAAAGGTTTAAG
1 GGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGG--GAAAGGTTTAAG
* * * *
3185 TCGTAACGGTGAACCTTGTACCTTAAAAACATGAA
64 TCGCAACGGCGAACCTTGTACCTCAGAAACATGAA
**
3220 GGGAAAGATTTAAGCCATAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTC
1 GGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTC
* * *
3285 GCAACTGCGAGCCTTGTACCTCAGAAACATGTA
66 GCAACGGCGAACCTTGTACCTCAGAAACATGAA
*
3318 GGGAAATATTTAAGCC
1 GGGAAAGATTTAAGCC
3334 CCACCACGAA
Statistics
Matches: 276, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
98 189 0.68
100 87 0.32
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (98 bp):
GGGAAAGATTTAAGCCGCAACGGCGAATCTAGTACCACAAAGATATGGAGGGAAAGGTTTAAGTC
GCAACGGCGAACCTTGTACCTCAGAAACATGAA
Found at i:3249 original size:198 final size:194
Alignment explanation
Indices: 2924--3495 Score: 713
Period size: 198 Copynumber: 3.0 Consensus size: 194
2914 TAGATGAGAT
* * * *
2924 GGGAAAGATTTAAGCTGCAATGGTGAATCTAGTACCACGAAGATATGGAGGGAAAGATTTAAGTT
1 GGGAAAGATTTAAGC-GCAACGGCGAATCTACTACCACGAAGATATGGAGGGAAAGGTTTAAGTT
*
2989 GCAATGGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGACGAATCTAG
65 GCAA-GGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAG
* *
3054 TACCACAAAGATATGGAGGGAAAGTTTTAAGTCGCAACAGTGAACCTTGTACCTCAGAAACATGA
129 TACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAACATGA
3119 A
194 A
*
3120 GGGAAAGATTTAAGTCGCAACGGCGAATCTACTACCACGAAGATATGGAGGATAAAAGGTTTAAG
1 GGGAAAGATTTAAG-CGCAACGGCGAATCTACTACCACGAAGATATGGAGG--GAAAGGTTTAAG
* * * * * **
3185 TCGTAACGGTGAACCTTGTACCTTAAAAACATGAAGGGAAAGATTTAAGCCATAACGGCGAATCT
63 TTGCAA-GGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCT
* *
3250 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACTGCGAGCCTTGTACCTCAGAAACAT
127 AGTACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAACAT
*
3315 GTA
192 GAA
* *
3318 GGGAAATATTTAA--G---C--C----C--C-ACCACGAAGATATAGAGGGAAAGGTTTAAGTTG
1 GGGAAAGATTTAAGCGCAACGGCGAATCTACTACCACGAAGATATGGAGGGAAAGGTTTAAGTTG
* * * * * * *
3369 CAAGGCGAATCTTGTACCTCAGAAACATGAAGGGAAATATTGAGGCCGCAACGGCGAGTTTGGTA
66 CAAGGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTA
* * * *
3434 CCACAAAGATATGGAGGGAAAGGTTTAAGTCGCGACGGCGAACCTTGTACCCCAAAAACATG
131 CCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAACATG
3496 CTAGGAAGAA
Statistics
Matches: 332, Mismatches: 41, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
180 107 0.32
181 15 0.05
183 17 0.05
184 1 0.00
186 1 0.00
190 1 0.00
192 1 0.00
195 1 0.00
196 46 0.14
197 1 0.00
198 141 0.42
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (194 bp):
GGGAAAGATTTAAGCGCAACGGCGAATCTACTACCACGAAGATATGGAGGGAAAGGTTTAAGTTG
CAAGGCGAACCTTGTACCTCAGAAACATGAAGGGAAAGATTTAAGCCGCAACGGCGAATCTAGTA
CCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAACATGAA
Found at i:3304 original size:49 final size:49
Alignment explanation
Indices: 2924--3331 Score: 329
Period size: 49 Copynumber: 8.3 Consensus size: 49
2914 TAGATGAGAT
* * * * *
2924 GGGAAAGATTTAAG-CTGCAATGGTGAATCTAGTACCACGAAGATATGGA
1 GGGAAAGATTTAAGTC-GCAACGGCGAACCTTGTACCACAAAGATATGGA
* * * * *
2973 GGGAAAGATTTAAGTTGCAATGGCGAACCTTGTACCTCAGAA-ACATGAA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACA-AAGATATGGA
* * * *
3022 GGGAAAGATTTAAGCCGCAACGACGAATCTAGTACCACAAAGATATGGA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACAAAGATATGGA
* * * * * *
3071 GGGAAAGTTTTAAGTCGCAACAGTGAACCTTGTACCTCAGAA-ACATGAA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACA-AAGATATGGA
* ** *
3120 GGGAAAGATTTAAGTCGCAACGGCGAATCTACTACCACGAAGATATGGA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACAAAGATATGGA
* * * * ** * * *
3169 GGATAAAAGGTTTAAGTCGTAACGGTGAACCTTGTACCTTAAAAACATGAA
1 GG--GAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACAAAGATATGGA
* ** * *
3220 GGGAAAGATTTAAGCCATAACGGCGAATCTAGTACCACAAAGATATGGA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACAAAGATATGGA
* * * * * *
3269 GGGAAAGGTTTAAGTCGCAACTGCGAGCCTTGTACCTCAGAA-ACATGTA
1 GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACA-AAGATATGGA
*
3318 GGGAAATATTTAAG
1 GGGAAAGATTTAAG
3332 CCCCACCACG
Statistics
Matches: 276, Mismatches: 75, Indels: 16
0.75 0.20 0.04
Matches are distributed among these distances:
48 4 0.01
49 230 0.83
50 6 0.02
51 36 0.13
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (49 bp):
GGGAAAGATTTAAGTCGCAACGGCGAACCTTGTACCACAAAGATATGGA
Found at i:3408 original size:82 final size:83
Alignment explanation
Indices: 3253--3409 Score: 244
Period size: 82 Copynumber: 1.9 Consensus size: 83
3243 CGAATCTAGT
* * * *
3253 ACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCAACTGCGAGCCTTGTACCTCAGAAACATGTA
1 ACCACAAAGATATAGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAACATGAA
3318 GGGAAATATTTAAGCCCC
66 GGGAAATATTTAAGCCCC
* * *
3336 ACCACGAAGATATAGAGGGAAAGGTTTAAGTTGCAA-GGCGAATCTTGTACCTCAGAAACATGAA
1 ACCACAAAGATATAGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAACATGAA
3400 GGGAAATATT
66 GGGAAATATT
3410 GAGGCCGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
82 34 0.51
83 33 0.49
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (83 bp):
ACCACAAAGATATAGAGGGAAAGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAACATGAA
GGGAAATATTTAAGCCCC
Found at i:3472 original size:49 final size:48
Alignment explanation
Indices: 3336--3489 Score: 123
Period size: 49 Copynumber: 3.2 Consensus size: 48
3326 TTTAAGCCCC
* * * *
3336 ACCACGAAGATATAGAGGGAAAGGTTTAAGTTGCAAGGCGAATCTTGT
1 ACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCACGGCGAATCTTGT
* * * ** * * * *
3384 ACCTCAGAA-ACATGAAGGGAAATATTGAGGCCGCAACGGCGAGT-TTGGT
1 ACCACA-AAGATATGGAGGGAAAGGTTTAAGTCGC-ACGGCGAATCTT-GT
*
3433 ACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCGACGGCGAACCTTGT
1 ACCACAAAGATATGGAGGGAAAGGTTTAAGTCGC-ACGGCGAATCTTGT
*
3482 ACCCCAAA
1 ACCACAAA
3490 AACATGCTAG
Statistics
Matches: 76, Mismatches: 25, Indels: 9
0.69 0.23 0.08
Matches are distributed among these distances:
48 24 0.32
49 50 0.66
50 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (48 bp):
ACCACAAAGATATGGAGGGAAAGGTTTAAGTCGCACGGCGAATCTTGT
Found at i:4302 original size:18 final size:18
Alignment explanation
Indices: 4279--4313 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4269 TCGGCTCCCA
*
4279 AGACTGTTCCTCTGCCCG
1 AGACTGCTCCTCTGCCCG
4297 AGACTGCTCCTCTGCCC
1 AGACTGCTCCTCTGCCC
4314 AAAGTCTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.43, G:0.20, T:0.26
Consensus pattern (18 bp):
AGACTGCTCCTCTGCCCG
Found at i:7368 original size:339 final size:340
Alignment explanation
Indices: 6084--19086 Score: 12288
Period size: 339 Copynumber: 38.1 Consensus size: 340
6074 TGGTATTTCC
* * *
6084 TTATTTTATTTATCGTAAGTTTACATATTGCAAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* *
6149 ATGAGCGTACTTTGCATTTTTATTTTATTTTCTTATTCGCAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * *
6214 TGCGTATATTTACATTCGAATTCGAGGCATGAATATGATGAAAGGTAGCCTTTATGTAAATAGAA
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* *
6279 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATTAGAATTTCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * *
6344 AGTCAAGCGTACTTGGGCGAGAGCAGTATTAGGATGGGTGACCTTCTGGGAAGTCCTAGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
6409 ACCCCTCTTTTTTTTA
326 ACCCCTC-TTTTTTTA
* * *
6425 TTATTTTAATTATCGTAAGTTTGCATTTTGCAAAATATTAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
6490 ATTAGCGTACTTTGCATTTTTACTTTA-TTTTTTATTCGTAAAATACGTCTACCTGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * *
6554 TGGGTATATTTACATTCAAATTCGAGGCACAAATACAATGAAAGGTAGCCTTCATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * * * * *
6619 TGCGCAAAGTCCTAATGGGTGCGTTCATTCTAGCACTAATGCAACGGATTCCATTAGAATTCTGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * * * *
6684 AATCAAGCGTGCTTGGGCGAGAGTAGTATTACGATGGATAACCTCTTGGGAATTCCTCATGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
6749 ACCCCTCTTTTTTTTA
326 ACCCCTC-TTTTTTTA
* * * * * * *
6765 TTATTTTATTTATCGTAAGTTTGTATTTTGCGAACTAACAATGCTTCTTGGCAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
6830 ATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTATTCGC-ATATCACGTCTTCCCAAGCTTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAT-ACGTCTACCCGAGCATTAT
* * *
6893 TTGGGTATATTTACATTCAAATTCGAGTCACGAATGA-GATGAAAGGTAGCCTTTATGTTAATAG
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAAT-ACGATGAAAGGTAGCCTTTATGTAAATAG
* * ** * * * * *
6957 ATTGTGCAAGAT-CTAAATGGTGCGATCATACCAACACTAATGCATCGAATCCCATCAGAACTCC
194 ATTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCC
* *
7021 GCAGTCAAGAGTGCTTGGGC-ATGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
259 GCAGTCAAGCGTGCTTGGGCGA-GAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
*
7085 TGCACTCCTC-TTTTTTA
323 TGCACCCCTCTTTTTTTA
* **
7102 TTATTTTATTTATCGTAAGTTTGCATTTTACGAAATAATAATGCTTATTCAGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
7167 ATTACCGTACTTTGCATTTTTATTTTATTTTCTTATTCGCAAAATACGTCTACCCGAGCATTAAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
7232 TGCGTATATTTACATTCGAATTCGAGGCATGAATACGATGAAAGGTAGCCTTCATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * **
7297 TGCGCAAAATCCTAACAGGTGCGTTCATACCAGCACTAATGCACCAGATCCCATTAGAATTTTGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * **
7362 AGTCAAGCGTGCTTGGGTGAGAGTAGTATTAGGATGGGTGACCTTCTACGAAGTCCTCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
7427 ACCCCTCTTTTTTTA
326 ACCCCTCTTTTTTTA
* * * * * *
7442 TTATTTTAATTATCGTAAGTTTTCATTTTACAAAATAATAATGCTTATTGGGAAACATTAAAAAT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * * * *
7507 ATTGGCGTACTTAGCA-ATGTGTTTTATTGTTTTATTTGCAGAAA-ACGTCTACCCAAGCATTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCA-AAATACGTCTACCCGAGCATTAT
* * * * * * *
7570 TTGAGCATATTTACATTCGAATTCGAGCCACAAATACCATAAAAGGTAGCCTTTATGTCAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * * * *
7635 TTGCGAAAAATCCTAACGGGTGCGTTCATACTAGCACTAATGCACCGGATTCAATTAGAATTCTG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * *
7700 TAGTCAAGCATGCTTGGGCGAGAGTAATATTAGGATGGGTGAACTCTTGGGAAGTCCTCGTGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
7765 CACCCTTCTTTTTTTTA
325 CACCCCTC-TTTTTTTA
* ** * * *
7782 TTATTTTATATATCGTAAGTTTGTGTTTTGCGAAATAATAATGCTTCTTGGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * *
7847 ATTAGTGTACTTTGCATTTTGATTTTA-TTTTTTATTCGC-AGATCACGTCTTCCCAAGCTTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAT-ACGTCTACCCGAGCATTAT
* * * *
7910 TTGGGTATATTTACATTCAAATTCGAGGCACGAATGCGATGAAAGGTAGCCTATATGTTAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * * * * * * * *
7975 TTGCGCAAAA-CCAAAAGGGTGTGATCATACCAACACTAATGCATCAGATTCCATCAAAACTCCG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
** * * * * *
8039 TTGTCAAGCGTGCTTAGACGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAGGTCCTCGTGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
8104 TACCCCTC-TTTTTTA
325 CACCCCTCTTTTTTTA
* *
8119 TTATTTTATTTATCGTAAGTTTGCATTTTGCAAAATAATAACT-CTTATTCGG-AACATTAACAT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAA-TGCTTATTGGGAAACATTAACAT
* * **
8182 TATTAGCGTACTTTGCATTTTTATTTTATTTTCTTATTCGCAAAATATGTCTACCAAAGCATTAT
65 TATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTAT
* * *
8247 TTGCGTATATTTACATTCGAATTCGAGGAACGAATATGATGAAAGGTAGCCTTTATGTAAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * **
8312 TTGCGCAAAATCCTAACGGGTGCGTTCATGCCAACACTAATGCACCGGATCCCATTAGAATTTTG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * *
8377 TAGTCAAGCGTGCTTAGGCGAGAGCAGTATTAAGATGGGTGACCTTCTGGGAAGTCCTCCTGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
8442 CACCCCTCTTTTTATTA
325 CACCCCTCTTTTT-TTA
* *
8459 TTATTTTAATTATCTTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
8524 ATTAGCGTTCTTTGCATTTTTATATTA-TTTTTTATTCGTAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
8588 TGGGTATATTTACATTCGAATTCGAGGCACGGATACGATGAAAGATAGCCTTTAAGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * *
8653 TGCG-TAAATCCTAACGGGTGCATTCATACCAGCACTAATGCACCGGATCCCGTCAGAACTCCAC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * *
8717 AGTCAAGCGTGTTTGGGCGAGAGTAGTATTAGGATGGGTGACTTCTTGGGAAGTCCTCATCTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
*
8782 ATCCCTCTTTTTTTA
326 ACCCCTCTTTTTTTA
* *
8797 TTATTTTATTTACCGTAAGTTTGCAATTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
8862 ATTAGCGTACGTTGCATTTTTATTTTATTTTCTTATTCGCAAAATACGTCTACCTGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
** * * * * * *
8927 TGCATATATTTACATTTGAATTCGAGCCACGAACAGGATGAATGGTAGCCTTTATGTAAATATAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * ** * * * * ***
8992 TGTGCAAAATCCTTATAGGTGCTTTCATACCAGCACTAATGC-CCAGATCCCATTACAATTCTAT
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * *
9056 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTTCTAGGAAGTCCTCATGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
*
9121 ATCCCTCTTTTTATTA
326 ACCCCTCTTTTT-TTA
* * * * *
9137 TTATTTTAATTATTGTAAGTTTACATTTTGCGAAATAATAATGCTTATTGGGAAACAATAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
9202 ATTAGCATACTTTGCAATTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGGGTATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
9267 TGGGTATATTTACATTCGAATTCAAGCCACGAATACGAAGAAAGGTAGCCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * * *
9332 TGCGCAAAGTCCTAACGGGTGCGTTCATTCTAACACTAATGCACCGGATTCCATTAGAATTCCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * *
9397 AATCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTAATCACTTGGGAAGTCCTCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
*
9462 ACCCTTCTTTTTTTTA
326 ACCCCTC-TTTTTTTA
* * * * *
9478 TTATTTTATTTATCATAAGTTTGCATTTTGCGAAATAATAATGCTTCTTGGAAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * * *
9543 ATTAGCATCCTTTGCATTTTTA-TTTATTTATTTATTCGC-AAATCACGTTTTCCCAAGCTTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAT-ACGTCTACCCGAGCATTAT
* * * *
9606 TTGGGTATATTTACATTCAAATACGAGGCACGAATGCGATGAAAGGTAGCCTTTATGTCAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
** * * * *
9671 TTGCGCAAAA-CCTAAATGATGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTCCG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * *
9735 CAGTGAAGCGTGCTTGGGCGAGAGTAGTAGTAGGATGGGTGACCTCATGGGATGTCCTCATGTTT
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
9800 TACCCCTC-TTTTTTA
325 CACCCCTCTTTTTTTA
* * * *
9815 TTATTCTATTTATCGTAAGTTTGCATTTTGTGAAATAATAATACTTATTCGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
*
9880 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCAATATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
9945 TGTGTATATTTACATTCGAATTCGAGGCACGAATATGATGAAAGGTAGTCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* *
10010 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATTCCATTAGAATTCCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * *
10075 AGTCAAGCGTGCTTGGGCGAAAGTAATATTAGGATGGGTGACCTCTTGGGAAGGCCTCATGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
10140 ACCCCTCTTTTTATTA
326 ACCCCTCTTTTT-TTA
* * * *
10156 TTATTTTATTTATCGTAAGTTTGCATTTTGAGAAATAATAATGCTTCTTGGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * *
10221 ATTAGCGTCCTTTGCATTTTCATTTTATTTTTTTATTCGC-AAATCACGTCTTCCCAAGCTTTCT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAT-ACGTCTACCCGAGCATTAT
** * * * * *
10285 TTGGGTATTTTATATTTACATTAAAATTCGAGGCATGAATGCGATGAAAGGTAGTCTTTATTTTA
130 TTGGG-----TATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAA
* ** * *
10350 ATAGATTGCGCAGAA-CCTAAATGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAA
190 ATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * * * *
10414 CTCCGCCGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCATGGGAAGTCCTCA
255 TTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCG
*
10479 TGTTGTACCCCTC-TTTTTTA
320 TGTTGCACCCCTCTTTTTTTA
*** * * *
10499 TTATTTTATTTAAAATAAGATTGCATGTTGCGAAATAATAATGCTTATTCGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* **
10564 ATTAGTGTACTTTGCATTTTTATTTTATTTCCTTATTCGCAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
10629 TGCGTATATTTACATTCGAATTCGAGGCACGAATATGATGAAAGGTAGCCTTTACGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * *
10694 TGCGCAAAATCCTAACAGGTGCGTTCATACCAGCACTAATGCACCGAATCCCATTAGAATTTCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * *
10759 AGTTAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACTTTCTGGGAAGTCCTAGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
10824 ACCCCTCTTTTTTTTA
326 ACCCCTC-TTTTTTTA
*
10840 TTATTTTAATTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
10905 ATTAGCGTTCTTTACATTTTTATTTTA-TTTTTTATTTGTAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * *
10969 TGGGAATATTTATATTCGGATTCGAGGCAAGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * ** * *
11034 TGCG-TAAATCCTAACGGGTGCATTCATACTAGCACTAATGCACCGGATCATATCAGAACTCCAC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * *
11098 AGTCAAGCGTGCTTGGGCGAGAGAAGTATTAGGATGGATGACCTCCTGGGAAGTCCTCATGTTGT
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
* *
11163 ATCTCTCTTTTTTATTA
326 ACCCCTC-TTTTT-TTA
** * * * *
11180 TTATTTTATTTATTATAAGTTTGCATTTTGCGAAATAATAATTCTTCTTGGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
11245 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTTATTTGCAAAATACGTCTTCTCGAGC-TTTT
66 ATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTAT
* * *
11309 TTGGGGTATATTTACATTCAAATTCGAGGCACGAATGCGATGAAAGGTAGTCTTTATGTAAATAG
130 TT-GGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAG
* * * * * * * * * *
11374 ATTGCGC-AAAGCCTAACGGGTGTGATAATACCAACGCAAATGCATCGGATCCCATCAGAACTCT
194 ATTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCC
* * * * * * * * *
11438 GCAGTTAAGGGTGGTTAGGCGAGAGTAGTAATATGATGTGTGATCTCTTGGGAAGTCCTCGTGTT
259 GCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
*
11503 GCACACCT-TTTTCGTTTA
324 GCACCCCTCTTTT--TTTA
* * * **
11521 TTATTTTATTTATCGTTAGTTTGCATTTTGCTAAATAATAATGCTTCATT-GGAAATAAGAACAT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTT-ATTGGGAAACATTAACAT
* * * * * * **
11585 TGTTAGCGTAGTTTGCATTTTTACTTTATTTTTATATTCGCAAAATACGTCTTCTCGAATATTAT
65 TATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTAT
* * * * * *
11650 TTGGGTATATTTACATTCAAATTCAAGGCATGAATGCAAGGAAAGGTAGCCTTTATGTAAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * *** * * * *
11715 TTACGTAAAA-CCTAACGGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAAGAACTCCG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * * * * * *** * * ***
11779 CAGTTAA-CGATGGTTGGGTGAGAGTAGTACTGGGATAGATTACGCAAAACCTAACAGGTGCGAA
260 CAGTCAAGCG-TGCTTGGGCGAGAGTAGTATTAGGATGGGTGAC-C---TCCTGGGAAGTCCTCG
** ** * * * *** **
11843 AATACCAGCACTAATGCACTGGA
320 TGTTGCACCCCT-CT-TTTTTTA
*** *** * ** * * * ** * * * * * * * *
11866 -TACCATAGGAACTCCG-CAGTTAACGGTGGTTGGGTGAGAGTAGTACTGGAATGGGTAAC-CT-
1 TTATTTTATTTA-T-CGTAAGTTTGC-AT-TTTGCGAAATAATAATGCT-TATTGGGAAACATTA
* *** * * * ** *
11927 -CCTTGGAAGTCCT-CGTGTTGCACCTCTATTTTTTATTATTTTATTTA-TCGTAAGTTTACAT-
61 ACATTATTAG-CGTAC-T-TTGCA--T-T-TTTATT-TTATTTT-TTTATTCGCAA-AATACGTC
*** * * * * ** ** * ** * **
11988 TTTGCGA-AATAATAAT-GGT-TATTGGGAAACATTAAAATTATTAGTGTAC-TTTGC-ATTTTT
116 TACCCGAGCATTAT-TTGGGTATATT----TACATTCGAATT-CGAG-GCACGAATACGA--TGA
*** *** * * * * ** * *** * *
12048 ATTTTATTTTTTTATTCGCAAAATATG-TCTTCTCGAGCT-TTTTTGGGTATATTTACATTCAAA
172 AAGGTA-GCCTTTA-T-G-TAAATA-GAT-TGCGCAAAATCCTAACGGG------TGCGTTC--A
* * ** * * * * * * *
12111 TTCGAGGCA-TGAATGCAATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAGCCTAACGGGT
223 TACCA-GCACT-AATGC----ACCGG-ATCC--CA--T-CAGA-ATTCCGC--AGTC-AA-GCGT
*** * * * * * *** * ** **
12175 GCTATAATACCAGCGCA-AATGCATCGGATCCCATCAGAACC-CAGCAGTTAAG-GGT-G-GTTG
271 GCT-T-GGGCGAGAGTAGTAT---TAGGAT-GGGT--G-ACCTC--CTGGGAAGTCCTCGTGTTG
** ***** ** **
12235 GGCGAGAGTAGTAATA
325 CACCCCTCTTTTTTTA
** * * ** * * * * * * ** * * *
12251 GGATGGGTGATCTCCTGGGAAGTTCT-CGTGTTAC-ACA-CCT--T-TTTCTT-----TC-TT-A
1 TTAT--TTTAT-TTATCGTAAGTT-TGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAA
** * * * ** * ** * * * * *
12303 TTTTATTTATCGTAAGTTTGCATTTTGAGAAATAATAATGCTTCATTGGAAATAAGAACAT-TA-
62 CATTA-TTAGCGT-ACTTTGCATTTT----TATTTTATTTTTTTATTCGCAA-AA-TACGTCTAC
** * * * ** * *
12366 -TTAGCATAATTT--GCATTTTTACTTTATTTTTATATTC---GCA-AAATACGTCTTCCCGAAC
119 CCGAGCATTATTTGGGTATATTTAC---A-TTCGA-ATTCGAGGCACGAATACG--AT---GAA-
* ** * * * * * * * * * *
12424 A-TTATTTGGGTATATTTACATTCAAATTCGAGGCATGAATGCGATGA-GAGGTAGCCTTTATGT
173 AGGTA---GCCTTTATGTA-AAT-AGATT-G-CGCA-AAAT-C-CTAACG-GGT-GCGTTCA--T
** * * ** * * * * *
12487 AAATAGATTGCGCAAAACCTAACGGGTGCGAAAAAACCAGCACTAATGCACCGGATCCCA-TCAG
224 --A-CCA--GCACTAATGC-ACCGGAT-C-------CCATCA-GAAT--TCC-G----CAGTCA-
* * * * * * * ***** ** * * ** *
12551 AAC-TCCATAGTC-A-AGT-GTGATTGGGCGA-GAGTAGTACCAGGATGGGTGACCTCCT-AGGA
266 AGCGTGCTTGGGCGAGAGTAGT-ATT-AG-GATGGGT-G-ACCTCCTGGGAAGTCCTCGTGTTGC
*** * * **
12610 AGTTCTCATGTTGCA
326 ACCCCTCTTTTTTTA
*** * ** * * * * ** ** * **
12625 CCCCTCTT-TTT-TTATTA-TTT-TATTTATAG-TAAGTTTGAATTTTGCAAAATTATAATGCTT
1 -TTATTTTATTTATCGTAAGTTTGCATTT-T-GCGAA--AT-AATAATGCTTATTGG--------
* * *
12685 ATTGGGAAACATTAACATTATTAGTGTACTTTGCATTTTTATTTTATTTTTTTATTTGTAAAATA
52 -----GAAACATTAACATTATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATA
* * * * * * *
12750 CATCTACCCGAGCATTATTTAGGTATGTTTACATTCGAATTCGTGGCAAGAATACAATGAAAGGC
112 CGTCTACCCGAGCATTATTTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGT
* *
12815 GGCCTTTATGTAAAT--A----G---AATCCTAACGGGTGCGTTCATACTAGCACTAATGCACCG
177 AGCCTTTATGTAAATAGATTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCG
* * * * * * *
12871 GATCACATCAGAACTCCACAGTCAAGCGTGCTTGGGCGAGAGTAGTACTAGAATGGGTGATCTCT
242 GATCCCATCAGAATTCCGCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCC
*
12936 TGGGAAGTCTTCGTGTTGCACCCCTCTTTTTTTA
307 TGGGAAGTCCTCGTGTTGCACCCCTCTTTTTTTA
* * *
12970 TTATTTTATTTATCGTAAGTTTGAATTTTACAAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
*
13035 ATTAGCATACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * * * *
13100 TGGGTATGTTTACATTCGAATTCGAGGCAAGAATACGACGAAAGGTGGCTTTTATGTGAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* ** * * * *
13165 TGCGC-AAATCCTAGCAAGTGTGTTCATACCATCACTAATGCACCGGATCCCATCATAATTCCAC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * *
13229 AATCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATTGGTAACCCCCTGGGAAGTTCTCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
**
13294 AATCCTCTTTTTTTA
326 ACCCCTCTTTTTTTA
* * * * *
13309 TTATTTTATTTATCGTAAGTTTGTATTTTGCAAAATAATAATGCTTCTTGGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * ** *
13374 ATTAACGTACTTTGGATTTTTATTTTA-TTTTTTATTCGTAAAATACGTCTTCCTAAGCTTTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * * * * *
13438 TTGGTATATTTACATTCAAATTCAAGGCACGAATGCGATGAAAGGTAGCCTTTATGTAAGTGGAA
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * * * * * *
13503 TGCAC-GAAGCCTAATGGGTGCGATAATACCAGCGCTAATGCACCGGATCCCATCAGAACTCCGT
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * *
13567 AGTTAAGGGTTG-TTGGGCGAGAGTAGTAATAGGATGGGTGTCCTCCTAGGAAGTCCTCGTGTTG
261 AGTCAAGCG-TGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
13631 CACCCCTCTTTTTTT-
325 CACCCCTCTTTTTTTA
** * ** *
13646 TT-TTTT-TTTATCGTAAGTTTGCATTTTATGAAATGATAATGCTCCTTTGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
*
13709 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCGAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * *
13774 TGGGTATATTTACATTCGAATTCGAGACACAAATAAGATGAAAGGTAGCCTTTACGTAAATAG-T
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * *** *
13838 TAGTGC-AAATCCTATCAATTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAAAATTCCG
196 T-GCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * *
13902 CAGTCAAGCGTGCTTGGGCGAGAGAAGTATTAGGATGGGTGACCCCCTGGAAAGTCCTCGTTTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCG---TG
13967 TTGCACCCCTCTTTTTTATTA
322 TTGCACCCCTC-TTTTT-TTA
* * * * * *
13988 TTATTTTATTTATCATAAGTTTGCATTTTGCAAAATAATAATGCTTCTTGGGAAACATGAAAACT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * *
14053 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTTGCGAAATACGTCTTCTCGAGCGTTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * * * *
14118 TGGGTATATTTACAATCAAATTCGAGGCACGAGTGCGATGAAAGATAGCCTTTATGTTAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * *
14183 TGCGCAAAA-CCTAATGGGTGCG-ACAATACCAGCACTAATGTACCGGATCCCAT-ATGAACTCC
196 TGCGCAAAATCCTAACGGGTGCGTTC-ATACCAGCACTAATGCACCGGATCCCATCA-GAATTCC
* * * * * ** *
14245 GTAGTGAAGCGTGCTTGGGCGGGAGTAGTACTAGGATAGGTGACCTCCTAAGAAGTTCTCGTGTT
259 GCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
14310 GCACCCCTC-TTTTTTA
324 GCACCCCTCTTTTTTTA
* * * * *
14326 TTATTTTATTTATCGTATGTTTGCATTTTTCGAAATAATAATGCTTCTTAGG-AACATGAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * *
14390 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTTGCAAAATACGTATATCCAAGCTTTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * * *
14455 TAGGTATATTTACATT-GAAATTCGAGGCACTAATGCGATAAAAGGTGGCCTTTATGTAAATAGA
131 TGGGTATATTTACATTCG-AATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * * * ** * * * **
14519 TTACACAAAA-CCTAACGGGTGTGATGATTTCAACACTAATGCACCGGATACCATCAGAACTCTA
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * * *
14583 CAGTTAAGGGTGCTTGGGCGAGAGTTGTACTAGTATGGATGA--TCCATTGGGAAGTCCTCGTGC
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCC--TGGGAAGTCCTCGTGT
** **
14646 TATACAACTCTTTTTTTA
323 TGCACCCCTCTTTTTTTA
* * * * * *
14664 TTA-TTTATTTATCGTAAATTTTCATTTTGCGAAATAATAATGCTTCTTTGGAAATATGAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
14728 ACTAGCGTACTTTGCATTTTTATTTTCTTTTTTTATTCGCAAAATTCGTCTTCCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
*** * * * *
14793 TGGGTATATTTTTGTTCAAATTCGAGGCACCAATGCGATGAAAGGTAGCCTTTATGTAACTAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * ** * * * * **
14858 TGCACAAAA-CCTAACGGGTGCGATAATGTCAACACTAATGCACCGAATACCATCAGAAATCCAT
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * * * *
14922 AGTAAAGAGTGATTGGGCAAGAGTAGTACTAGGATGGGTGATCTCCTGGGAAGTCCCCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
14987 ACCCCTC--TTTTT-
326 ACCCCTCTTTTTTTA
* ** *
14999 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAGTAATGCTCCTTGGGAAACATGAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
** * * * * * * * *
15064 ATTAGTTTACTTTGCATTTTTATTTTCTTTTGTTATTCACGAGATACGTATACTCAAG-ATTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCA-TTAT
* * ** *
15128 TTGGGTATATTTACATTCAAATTCGAGGCATGAATGTGATGAAAGGTAGCCTTTATGTTAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
** * * * * * * *
15193 TTATGCAAAA-CCTAGCGGGTGCGATCATACCAGCACTAATGCATCAGATCCCATTAGAACTCCT
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * * * *
15257 CTGTCAAGCGTGCTTGGGTGAGAGTAGTACTAGGATTGGTGACCTCTTGAGAAGTCCTCATGTTC
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
15322 CACCCC-CTTTTTTATTA
325 CACCCCTC-TTTTT-TTA
* *
15339 TTATTTTATTTATCGTAAGTTTGTATTTTGCAAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * * *
15404 ATTAGGGTACTTTACATTTTTTTTTTA-ATTTTTATTCACAAAATATGTCTACTCGAGCA-T-TT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* *
15466 TGGGTATATTTACATTCGAATTCGAGGCACAAAAACGATGAAAGGTAGCCTTTATGTAAACT-GA
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAA-TAGA
* * * * * * *
15530 TTACACAAAA-CCTAATGGGTGCGTTCAAACCAGCACTAATGAACCAGATCCCATCAGAACTCCG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * * *
15594 CAGTCAAGCTTGCTT-GG-GAAACTGGTACTAGGATGGGTGATCTCCTGGGAAGTCCTCGTGTTA
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
15657 CACCCCTCTTTTTTTA
325 CACCCCTCTTTTTTTA
* * * * *
15673 TTATTTTATTTATCATAAGTTTGCATTTTGCAAAATAATAATGCTTCTTGGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * ** * *
15738 ATTAGCGTACTTTGCATTTTTATTTTAATTTTGTATTCGCAAAATAATTCTTCTCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * * *
15803 TGGGTATATTTACATTCAAATTCGAGGCATGAATGCGATTAAAGGTAGCCTTTATGTTAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* ** * * * * * *
15868 TGCGCAAAAACCTAACGGGTAAGATAATACTAGCACTAATACACCGGATCCCATCAGAACTCTGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * * * * *
15933 AGTTAAGGGTGGTTGGGCGAGAGTACTACTAGGATGGGTGATCTCCTGGGAAGTCCTTGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
15998 ACCCCTCTTTTTTTA
326 ACCCCTCTTTTTTTA
* * * * * * * *
16013 TTATTTAATTTATCGTAAGCTTGTATTTTCCAAAATAATAATGCTTCTTGCGAAACATGAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * * *
16078 ATTAGCATAATTTGCATTTTTATTTTATTTTATT-TTCGTAAAGTAGGTCTACCCAAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
16142 TGGTTATATTTACATTCGAATTCGAGGCACGAATACGATGAATGGTAGACTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * *
16207 TGCACAAAA-CCTAATGGGTGCGTTCATACCAACTCTAATGCACCGGATCCCAAT-AGAACTCCG
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCC-ATCAGAATTCCG
* * *
16270 TAGTCAAGCGTGCTTGGGCGAGAGTAGT-CTAGGATGGGTGACCTCC-GGGAAGTCCTCATGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
16333 CACCCCTCTTTTTTTA
325 CACCCCTCTTTTTTTA
* * * *
16349 TT-TTTTATTTATCGTAAGTTTGCATTTTGCTAAATAATAATGCTAATTGGGGAACATTAATATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * *
16413 ATTAGCGTTCTTTGCATTTTTATTTTATTTTTTTATTTGCAAAATACGTTTACCTGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
16478 TGAGTATATTTACATTTGAATCCGAGGTC-CGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
131 TGGGTATATTTACATTCGAATTCGAGG-CACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * * * * **
16542 TTGTGC-AAATCCTAATGGGTGTGTTCATACCAACTCTAACGCACCGGATTTCATCAGAATTCCG
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* *
16606 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCTTGGGAAGTCCTTGTGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
16671 CATCCCTCTTTTTTTA
325 CACCCCTCTTTTTTTA
* * * *
16687 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTCTTAGGAAACATGAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * *
16752 ATTAACGTCCTTTGCATTTTTATTTTATTTTTTTATTCGC-AAATCACTTCTTCCCAAGCCTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAAT-ACGTCTACCCGAGCATTAT
* * * * * *
16816 TTGGGTATATTTACATTCAAATTCAAGACACGAATGCAATGAAAGGTAGCCTTTATGTTAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
** * ** * * *
16881 TTGCGCAAAA-CCTAAATGGTACAATCATACCAGCACTAATGCATCGGATCCCATCAGAACTCCA
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * * * *
16945 CAGTGAAGCGTGCTTGGGCAAGAGTAATAGTAGGATGGGTGACCTCATGGGAAGTCCTCCTGTTT
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
17010 TACCCCTC-TTTTTTA
325 CACCCCTCTTTTTTTA
* * *
17025 TTATTTTATTTATCGTAAGTTTGCCTTTTGTGAAATAATAATGCTTATTCGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
17090 ATTAGCGTACTTTACATTTTTATTTTATTGTCTTATTCGCAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * * *
17155 TGCGTATATTTACATTCGAATTCGAGGCACGAATATGATGAATGGTAGTCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* ** * * *
17220 TGCGCAAAATCTTAACGGGTGAATTCATACCAGCACTAATGCACTGGATCCCATTAGAATTTCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * *
17285 AGTCAAGCGTGCTTGGGCTAGAGCAGTATTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
17350 ACCCCTCTTTTTATTA
326 ACCCCTCTTTTT-TTA
* * *
17366 TTATTTTAATTATCTTAAGTTTTCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
** *
17431 ATTAGCGTTGTTTGCATTTTTA---T-TTTTTTTATTCGTAAAATACGTCTACCCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
17492 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * *
17557 TGTGC-AAATCCTAACGGATGCGTTCATACTAGCACTAACGCACAGGATCCCATCAGAATTCCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * *
17621 AGTCCAGCGTGCTTGGGCGAGAGTAGT-CTAGGATGGATGACCTCC-GGGAAGTCGTCGTGTTGC
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
*
17684 ACCCGTCTTTTTTTA
326 ACCCCTCTTTTTTTA
* *
17699 TT-TTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATTCTTATTGGGGAACATTAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
17763 ATTAGCGTTCTTTTCATTTTTATTTTA-TTTTTTATTCGCAAAATACTTCTA-CCGAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
*
17826 TGGGTATATTTACATTCGAATTCGAGGCACAAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * *
17891 TGAGC-AAATCCTAACGGGTGCGTTCATACCAACACTAACGCACCGGATCCCATCAGAATTCCGC
196 TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
* * * *
17955 AATCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGT
261 AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
*
18020 ACCCCTCTCTTTTTA
326 ACCCCTCTTTTTTTA
* * * *
18035 TGATTTTATTTATCATAAGTTTGCATTTTACGAAATAATAATGCTTCA-TGGGAAACATGAACAT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTT-ATTGGGAAACATTAACAT
* * * *
18099 TATTTA-CGTACTCTGCATTTTTATTTTATTTTTTTATTCACAAAATACATCTACCCGAGCTTTA
65 TA-TTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTA
* * * * *
18163 TTTGGGTATATTTACATTCAAATTTGAGGCAAGAATGCGATGAAAGGTAGCCTTTGTGTAAATAG
129 TTTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAG
* * * ** * ** *
18228 ATTGCACAAAA-CCTAATGGGTGCGATCATGGCACCACTAATGCACCAAATCCCATCAGAACTCC
194 ATTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCC
** * ** * * * * ** *
18292 TTAGTTAAGTTTTCTTGGGCGAGATTAGTATTAGGACGGGTGACCTCGTACGAAGTCCTCTTGTT
259 GCAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
*
18357 GCA-CTCT-TTTTTTTAA
324 GCACCCCTCTTTTTTT-A
* * * * *
18373 TTAATTTATTTAGCGTAAGTTTGCATTTTTCGAAATAATAATGCTTTTTGGGAAACATTAAAATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * *
18438 ATTAGCGTACTTTGCTTTTTTATTTTATTTTTTTATT--C----TACGTCTACTCAAGCATTATT
66 ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
* * *
18497 TTGGTATATTTACATTCGAATTCGAGGCACGAATATGATGAAAGGTAGCCTTTATGTAAGTAGAT
131 TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
* * * * * *
18562 TGCGTAAAA-CGTAACGGGTGCGATT-ATCCCAGCACTAATGCATCGGATCCCATTAGAACTCCG
196 TGCGCAAAATCCTAACGGGTGCG-TTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * * * ** * * * * *
18625 CAATTAAGCATTCTAAGGTGAGCGTAGTACTAGGATGGGTGACCACCTGGGAAGTCCTTGTGTTG
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTG
*
18690 CACCCCTCTTTTTTTTG
325 CACCCCTC-TTTTTTTA
* * ** * *
18707 TTATTTTATTTATCGTAAGTTTTCATTTTGCGAAATAATAATGTTTCCTGGGAGACATGAACATT
1 TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
* * * * * * *
18772 ATTTGAGTACTTTGTATTTTTATTTTATTTTTTTTATTTGCGAAGTACGTCTACCCGAGCTTTAT
66 ATTAGCGTACTTTGCATTTTTATTTTA-TTTTTTTATTCGCAAAATACGTCTACCCGAGCATTAT
* * *
18837 TTGGGTATATTTGCATTCAAATTCGAGGCACGAATGCGATGAAAGGTAGCCTTTATGTAAATAGA
130 TTGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGA
* * * * * * *
18902 TTACGCAAAA-CCTAACGGGTGCGATCATACCACCACTAATGCATCGGATGCCATCAGAACTCCT
195 TTGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCG
* * ** * *
18966 TAGTTAAGTTTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCT-CTGGGGAAGTTCTCGTGTT
260 CAGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCT-GGGAAGTCCTCGTGTT
*
19030 GCACCCCTCTCTTTTTA
324 GCACCCCTCTTTTTTTA
* ** *
19047 TTATTCTATTTATTATAAGTTTTG-ATTTTACGAAATAATA
1 TTATTTTATTTATCGTAAG-TTTGCATTTTGCGAAATAATA
19087 CTTCTTCTGA
Statistics
Matches: 10368, Mismatches: 1939, Indels: 711
0.80 0.15 0.05
Matches are distributed among these distances:
331 128 0.01
332 249 0.02
333 10 0.00
334 353 0.03
335 315 0.03
336 789 0.08
337 993 0.10
338 1397 0.13
339 2163 0.21
340 1760 0.17
341 874 0.08
342 199 0.02
343 118 0.01
344 302 0.03
345 154 0.01
346 77 0.01
347 28 0.00
348 10 0.00
349 3 0.00
350 5 0.00
351 13 0.00
352 22 0.00
353 7 0.00
354 11 0.00
355 5 0.00
356 5 0.00
357 4 0.00
358 1 0.00
359 2 0.00
360 11 0.00
361 14 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 2 0.00
368 8 0.00
369 13 0.00
370 19 0.00
371 5 0.00
372 5 0.00
373 12 0.00
374 30 0.00
375 29 0.00
376 29 0.00
377 8 0.00
378 7 0.00
379 10 0.00
380 10 0.00
381 10 0.00
382 3 0.00
383 4 0.00
384 5 0.00
385 13 0.00
386 8 0.00
387 10 0.00
388 11 0.00
389 14 0.00
390 12 0.00
391 15 0.00
392 13 0.00
393 7 0.00
394 8 0.00
395 12 0.00
396 7 0.00
397 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (340 bp):
TTATTTTATTTATCGTAAGTTTGCATTTTGCGAAATAATAATGCTTATTGGGAAACATTAACATT
ATTAGCGTACTTTGCATTTTTATTTTATTTTTTTATTCGCAAAATACGTCTACCCGAGCATTATT
TGGGTATATTTACATTCGAATTCGAGGCACGAATACGATGAAAGGTAGCCTTTATGTAAATAGAT
TGCGCAAAATCCTAACGGGTGCGTTCATACCAGCACTAATGCACCGGATCCCATCAGAATTCCGC
AGTCAAGCGTGCTTGGGCGAGAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGC
ACCCCTCTTTTTTTA
Found at i:11889 original size:103 final size:103
Alignment explanation
Indices: 11710--11914 Score: 374
Period size: 103 Copynumber: 2.0 Consensus size: 103
11700 CTTTATGTAA
* *
11710 ATAGATTACGTAAAACCTAACGGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAAGAAC
1 ATAGATTACGCAAAACCTAACAGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAAGAAC
11775 TCCGCAGTTAACGATGGTTGGGTGAGAGTAGTACTGGG
66 TCCGCAGTTAACGATGGTTGGGTGAGAGTAGTACTGGG
*
11813 ATAGATTACGCAAAACCTAACAGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAGGAAC
1 ATAGATTACGCAAAACCTAACAGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAAGAAC
*
11878 TCCGCAGTTAACGGTGGTTGGGTGAGAGTAGTACTGG
66 TCCGCAGTTAACGATGGTTGGGTGAGAGTAGTACTGG
11915 AATGGGTAAC
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (103 bp):
ATAGATTACGCAAAACCTAACAGGTGCGAAAATACCAGCACTAATGCACTGGATACCATAAGAAC
TCCGCAGTTAACGATGGTTGGGTGAGAGTAGTACTGGG
Found at i:27791 original size:13 final size:13
Alignment explanation
Indices: 27773--27797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27763 TAAGTTAAAA
27773 ATGCTAAAAATGC
1 ATGCTAAAAATGC
27786 ATGCTAAAAATG
1 ATGCTAAAAATG
27798 ATAAAATGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCTAAAAATGC
Found at i:34056 original size:22 final size:22
Alignment explanation
Indices: 34031--34076 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
34021 ATGTTTAAAG
* *
34031 AGAGAATAAAAGAATGAATTGA
1 AGAGAATAAAAGAAAGAATCGA
34053 AGAGAATAAAAGAAAGAATCGA
1 AGAGAATAAAAGAAAGAATCGA
34075 AG
1 AG
34077 CATCCTATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.61, C:0.02, G:0.24, T:0.13
Consensus pattern (22 bp):
AGAGAATAAAAGAAAGAATCGA
Found at i:35947 original size:9 final size:8
Alignment explanation
Indices: 35895--35946 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
35885 TCATAAACCG
*
35895 AAAATAAA
1 AAAATAAC
35903 AAAATAA-
1 AAAATAAC
* *
35910 ATAATAAT
1 AAAATAAC
*
35918 AATAATAAT
1 AA-AATAAC
35927 AAAATAAC
1 AAAATAAC
35935 AAAATAAC
1 AAAATAAC
35943 AAAA
1 AAAA
35947 ATCGTATCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
7 6 0.15
8 25 0.64
9 8 0.21
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (8 bp):
AAAATAAC
Found at i:40198 original size:19 final size:19
Alignment explanation
Indices: 40170--40212 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
40160 CAGTCATAAG
*
40170 TGCTTTTTCAAACCAAAAA
1 TGCTTCTTCAAACCAAAAA
*
40189 TGCTTCTTCAAACTAAAAA
1 TGCTTCTTCAAACCAAAAA
40208 TGCTT
1 TGCTT
40213 TTTTTTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (19 bp):
TGCTTCTTCAAACCAAAAA
Found at i:56040 original size:23 final size:23
Alignment explanation
Indices: 56011--56056 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
56001 TTGAGCCATG
56011 GGGAGCACCGAAGATCCAACAGT
1 GGGAGCACCGAAGATCCAACAGT
* *
56034 GGGAGCATCGATGATCCAACAGT
1 GGGAGCACCGAAGATCCAACAGT
56057 ACGCTATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.30, T:0.13
Consensus pattern (23 bp):
GGGAGCACCGAAGATCCAACAGT
Found at i:61330 original size:2 final size:2
Alignment explanation
Indices: 61323--61351 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
61313 AAGTTGAAAC
61323 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61352 GTTTCTTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62043 original size:25 final size:25
Alignment explanation
Indices: 62009--62059 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
61999 TCAATTACAT
62009 AGTCAACTAACTGTTGCCTCATCCA
1 AGTCAACTAACTGTTGCCTCATCCA
62034 AGTCAACTAACTGTTGCCTCATCCA
1 AGTCAACTAACTGTTGCCTCATCCA
62059 A
1 A
62060 AGAATTTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (25 bp):
AGTCAACTAACTGTTGCCTCATCCA
Found at i:67768 original size:24 final size:26
Alignment explanation
Indices: 67741--67788 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
67731 AAAACTTCTT
67741 CACTTATGA-AACCATTT-AAAAATG
1 CACTTATGACAACCATTTGAAAAATG
* *
67765 CACTTTTGACATCCATTTGAAAAA
1 CACTTATGACAACCATTTGAAAAA
67789 GTTTGAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 7 0.35
26 5 0.25
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
CACTTATGACAACCATTTGAAAAATG
Found at i:81756 original size:24 final size:24
Alignment explanation
Indices: 81728--81776 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81718 TAAAGCATCC
81728 TCATTTTGAGATATGTTTAATTTT
1 TCATTTTGAGATATGTTTAATTTT
81752 TCATTTTGAGATATGTTTAATTTT
1 TCATTTTGAGATATGTTTAATTTT
81776 T
1 T
81777 TTAGAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.59
Consensus pattern (24 bp):
TCATTTTGAGATATGTTTAATTTT
Found at i:89523 original size:5 final size:5
Alignment explanation
Indices: 89485--89539 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
89475 TAGCGTAATC
* * * * *
89485 TATTG TATTT TAATG TATTT AATTA TATTTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT
89536 TATT
1 TATT
89540 AATATAATTG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
5 36 0.90
6 4 0.10
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (5 bp):
TATTT
Found at i:89607 original size:6 final size:6
Alignment explanation
Indices: 89598--89705 Score: 84
Period size: 6 Copynumber: 19.0 Consensus size: 6
89588 AACTTTTGAT
* * * **
89598 TTTAAA TTTATA -TT-AA TTTAAA -TTGAT TTTAAA TTTATT TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** *
89643 TTTAAA TTT-AT TTTAAA TTTAAA TTTAAA TTTATT TTTAAA TTTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
89690 TTT--A GTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
89706 ATGGTTTTAA
Statistics
Matches: 77, Mismatches: 19, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
4 4 0.05
5 11 0.14
6 62 0.81
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:89632 original size:17 final size:17
Alignment explanation
Indices: 89598--89739 Score: 92
Period size: 17 Copynumber: 8.4 Consensus size: 17
89588 AACTTTTGAT
*
89598 TTTAAATTTATATT-AA
1 TTTAAATTTATTTTAAA
*
89614 TTTAAATTGATTTTAAA
1 TTTAAATTTATTTTAAA
** *
89631 TTTATTTTTAAATTTAAA
1 TTTAAATTT-ATTTTAAA
* *
89649 TTT-ATTTTAAATTTAAA
1 TTTAAATTT-ATTTTAAA
89666 TTTAAATTTATTTTTAAA
1 TTTAAATTTA-TTTTAAA
* *
89684 TTTTAATTTA-GTTAAA
1 TTTAAATTTATTTTAAA
* **
89700 TTTAAAATGGTTTTAAA
1 TTTAAATTTATTTTAAA
* * **
89717 CTTAAAATTAAATTAAA
1 TTTAAATTTATTTTAAA
89734 TTTAAA
1 TTTAAA
89740 ATGTCCAAAT
Statistics
Matches: 99, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
16 23 0.23
17 47 0.47
18 29 0.29
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:89681 original size:29 final size:29
Alignment explanation
Indices: 89593--89675 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
89583 GATCAAACTT
89593 TTGATTTTAAATTTATA-TT-AATTTAAA
1 TTGATTTTAAATTTATATTTAAATTTAAA
*
89620 TTGATTTTAAATTTATTTTTAAATTTAAA
1 TTGATTTTAAATTTATATTTAAATTTAAA
* *
89649 TTTATTTTAAATTTAAATTTAAATTTA
1 TTGATTTTAAATTTATATTTAAATTTA
89676 TTTTTAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 16 0.32
28 2 0.04
29 32 0.64
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
TTGATTTTAAATTTATATTTAAATTTAAA
Found at i:89702 original size:24 final size:24
Alignment explanation
Indices: 89637--89693 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
89627 TAAATTTATT
*
89637 TTTAAATTTAAATTTA-TTTTAAA
1 TTTAAATTTAAATTAATTTTTAAA
*
89660 TTTAAATTTAAATTTATTTTTAAA
1 TTTAAATTTAAATTAATTTTTAAA
*
89684 TTTTAATTTA
1 TTTAAATTTA
89694 GTTAAATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTAAATTTAAATTAATTTTTAAA
Found at i:96192 original size:208 final size:209
Alignment explanation
Indices: 95602--96418 Score: 1185
Period size: 209 Copynumber: 3.9 Consensus size: 209
95592 AAGTTAAGCA
* * * *
95602 GTCATCTTCTTGATGAGATACTGAGAAG-AGACCAAATCAATGAAACCAGGCTCAAAATGAGCGA
1 GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAA
* * * * * *
95666 ATCTTCAAACCCCAGCTTCCTGATAAGATACTGAGAAGCATGTCAAAGTAAT-AAATCGGTTACC
66 ATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAAT-GGTTAGC
* * * *
95730 TTCCTGATGAGATACAGAGAAGTGAACCAGATCTAG-CTTCCTGATGAGATACAGAGAAGTGGAT
130 TTCCTGATGAGATACTGAGAAGTGGACCAAAT-TCGCCTTCCTGATGAGATACAGAGAAGTGGAT
** *
95794 CAAAACAAGTGATGAG
194 TGAAACAAGTGATGCG
* * *
95810 GTCATCTTCCTGATGAGAAACTGAGAAGTAGACCAAATCAATGAAACCAAGCTCAAAGCGAGCAA
1 GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAA
* * * * *
95875 ATCTTTGAACCGCAACTTCCCGATGAGATACAGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
66 ATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
* *
95940 TCCTGATAAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAAAGAAGTGGATTG
131 TCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTG
96005 AAACAAGTGATGCG
196 AAACAAGTGATGCG
* * *
96019 GTCATCTTCTTGATAAGATACTGAGAAGAAGGCCAAATCAATGAAACCAAGCTCAAAGTGAG-AA
1 GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAA
* * * *
96083 ATCTTCGAACTCCAGCTTCCTAATGAGATACTGCGAAGCAAGTCGAAGCAATAAAATGGTTAGCT
66 ATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
* *
96148 TCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGCGGAATG
131 TCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTG
96213 AAACAAGTGATGCG
196 AAACAAGTGATGCG
**
96227 GTCATCTTCCTGATGAGATACTGAGAAGAAGGTCAAATCAAT-AAAGCCAAGCTCAAAGTGAGCA
1 GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAA-CCAAGCTCAAAGTGAGCA
* *
96291 AATCTTCTAACCCCAGCTTCTTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGC
65 AATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGC
* * *
96356 TTCCTGATGAGATACTGAGAAATGGACCAAATTCGCCTTCCTGATGAGATACTGAGAAATGGA
130 TTCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGA
96419 CCAAATTCGC
Statistics
Matches: 546, Mismatches: 58, Indels: 9
0.89 0.09 0.01
Matches are distributed among these distances:
207 3 0.01
208 216 0.40
209 323 0.59
210 4 0.01
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (209 bp):
GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAATGAAACCAAGCTCAAAGTGAGCAA
ATCTTCGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCT
TCCTGATGAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACAGAGAAGTGGATTG
AAACAAGTGATGCG
Found at i:96363 original size:417 final size:417
Alignment explanation
Indices: 95602--96407 Score: 1219
Period size: 417 Copynumber: 1.9 Consensus size: 417
95592 AAGTTAAGCA
* * *
95602 GTCATCTTCTTGATGAGATACTGAGAAGAGACCAAATCAATGAAACCAGGCTCAAAATGAGCGAA
1 GTCATCTTCTTGATAAGATACTGAGAAGAGACCAAATCAATGAAACCAAGCTCAAAATGAGCAAA
* * *
95667 TCTTCAAACCCCAGCTTCCTGATAAGATACTGAGAAGCATGTCAAAGTAATAAATCGGTTACCTT
66 TCTTCAAACCCCAGCTTCCTAATAAGATACTGAGAAGCAAGTCAAAGCAATAAATCGGTTACCTT
* *
95732 CCTGATGAGATACAGAGAAGTGAACCAGATCTAGCTTCCTGATGAGATACAGAGAAGTGGATCAA
131 CCTGATGAGATACAGAGAAGTGAACCAAATCTAGCTTCCTGATGAGATACAGAGAAGCGGATCAA
*
95797 AACAAGTGATGAGGTCATCTTCCTGATGAGAAACTGAGAAGTAGACCAAATCAATGAAACCAAGC
196 AACAAGTGATGAGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAATGAAACCAAGC
*
95862 TCAAAGCGAGCAAATCTTTGAACCGCAACTTCCCGATGAGATACAGAGAAGCAGGTCGAAGCAAT
261 TCAAAGCGAGCAAATCTTTGAACCCCAACTTCCCGATGAGATACAGAGAAGCAGGTCGAAGCAAT
*
95927 AAAATGGTTAGCTTCCTGATAAGATACTGAGAAGTGGACCAAATTCGCCTTCCTGATGAGATACA
326 AAAATGGTTAGCTTCCTGATAAGATACTGAGAAATGGACCAAATTCGCCTTCCTGATGAGATACA
95992 AAGAAGTGGATTGAAACAAGTGATGCG
391 AAGAAGTGGATTGAAACAAGTGATGCG
* *
96019 GTCATCTTCTTGATAAGATACTGAGAAGAAGGCCAAATCAATGAAACCAAGCTCAAAGTGAG-AA
1 GTCATCTTCTTGATAAGATACTGAGAAG-AGACCAAATCAATGAAACCAAGCTCAAAATGAGCAA
* * * * * *
96083 ATCTTCGAACTCCAGCTTCCTAATGAGATACTGCGAAGCAAGTCGAAGCAATAAAAT-GGTTAGC
65 ATCTTCAAACCCCAGCTTCCTAATAAGATACTGAGAAGCAAGTCAAAGCAAT-AAATCGGTTACC
* * *
96147 TTCCTGATGAGATACTGAGAAGTGGACCAAAT-TCGCCTTCCTGATGAGATACAGAGAAGCGGAA
129 TTCCTGATGAGATACAGAGAAGTGAACCAAATCTAG-CTTCCTGATGAGATACAGAGAAGCGG-A
* * * **
96211 T-GAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGAAGGTCAAATCAAT-AAAGC
192 TCAAAACAAGTGATGAGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAATGAAA-C
* * ** *
96274 CAAGCTCAAAGTGAGCAAATCTTCT-AACCCCAGCTTCTTGATGAGATACTGAGAAGCAGGTCGA
256 CAAGCTCAAAGCGAGCAAATCTT-TGAACCCCAACTTCCCGATGAGATACAGAGAAGCAGGTCGA
*
96338 AGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAATGGACCAAATTCGCCTTCCTGATGA
320 AGCAATAAAATGGTTAGCTTCCTGATAAGATACTGAGAAATGGACCAAATTCGCCTTCCTGATGA
96403 GATAC
385 GATAC
96408 TGAGAAATGG
Statistics
Matches: 350, Mismatches: 33, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
416 5 0.01
417 308 0.88
418 37 0.11
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (417 bp):
GTCATCTTCTTGATAAGATACTGAGAAGAGACCAAATCAATGAAACCAAGCTCAAAATGAGCAAA
TCTTCAAACCCCAGCTTCCTAATAAGATACTGAGAAGCAAGTCAAAGCAATAAATCGGTTACCTT
CCTGATGAGATACAGAGAAGTGAACCAAATCTAGCTTCCTGATGAGATACAGAGAAGCGGATCAA
AACAAGTGATGAGGTCATCTTCCTGATGAGAAACTGAGAAGAAGACCAAATCAATGAAACCAAGC
TCAAAGCGAGCAAATCTTTGAACCCCAACTTCCCGATGAGATACAGAGAAGCAGGTCGAAGCAAT
AAAATGGTTAGCTTCCTGATAAGATACTGAGAAATGGACCAAATTCGCCTTCCTGATGAGATACA
AAGAAGTGGATTGAAACAAGTGATGCG
Found at i:96396 original size:37 final size:37
Alignment explanation
Indices: 96355--96450 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
96345 AAATGGTTAG
96355 CTTCCTGATGAGATACTGAGAAATGGACCAAATTCGC
1 CTTCCTGATGAGATACTGAGAAATGGACCAAATTCGC
96392 CTTCCTGATGAGATACTGAGAAATGGACCAAATTCGC
1 CTTCCTGATGAGATACTGAGAAATGGACCAAATTCGC
* *
96429 CTTCCTAATGAGATACAGAGAA
1 CTTCCTGATGAGATACTGAGAA
96451 GCGGATTGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (37 bp):
CTTCCTGATGAGATACTGAGAAATGGACCAAATTCGC
Found at i:96869 original size:17 final size:17
Alignment explanation
Indices: 96854--96926 Score: 85
Period size: 17 Copynumber: 4.4 Consensus size: 17
96844 TTAAATTGAT
*
96854 TTTAAATTTTTTTTGAA
1 TTTAAATTTTTTTTAAA
* *
96871 TTTTATTTTTTTTTAAA
1 TTTAAATTTTTTTTAAA
*
96888 TTTAAATTTGTTTTAAA
1 TTTAAATTTTTTTTAAA
**
96905 TTTAAA-TTTAGTTAAA
1 TTTAAATTTTTTTTAAA
96921 TTTAAA
1 TTTAAA
96927 ATGGTTTTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
16 13 0.28
17 34 0.72
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTTAAATTTTTTTTAAA
Found at i:96891 original size:16 final size:16
Alignment explanation
Indices: 96859--96908 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
96849 TTGATTTTAA
* *
96859 ATTTTTTTTGAATTTT
1 ATTTTTTTTTAAATTT
96875 ATTTTTTTTTAAATTT
1 ATTTTTTTTTAAATTT
* *
96891 AAATTTGTTTTAAATTT
1 -ATTTTTTTTTAAATTT
96908 A
1 A
96909 AATTTAGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (16 bp):
ATTTTTTTTTAAATTT
Found at i:96925 original size:33 final size:34
Alignment explanation
Indices: 96883--96962 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
96873 TTATTTTTTT
* * * * *
96883 TTAAATTTAAATTTGTTTTAAA-TTTAAATTTAG
1 TTAAATTTAAAATGGTTTTAAACTTAAAATTAAA
96916 TTAAATTTAAAATGGTTTTAAACTTAAAATTAAA
1 TTAAATTTAAAATGGTTTTAAACTTAAAATTAAA
96950 TTAAATTTAAAAT
1 TTAAATTTAAAAT
96963 TTCCAAATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 20 0.49
34 21 0.51
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (34 bp):
TTAAATTTAAAATGGTTTTAAACTTAAAATTAAA
Found at i:96928 original size:17 final size:16
Alignment explanation
Indices: 96883--96964 Score: 62
Period size: 17 Copynumber: 4.9 Consensus size: 16
96873 TTATTTTTTT
96883 TTAAATTT-AAATTTG
1 TTAAATTTAAAATTTG
96898 TTTTAAATTT-AAATTTAG
1 --TTAAATTTAAAATTT-G
96916 TTAAATTTAAAATGGTT-
1 TTAAATTTAAAAT--TTG
* **
96933 TTAAACTTAAAATTAAA
1 TTAAATTTAAAATT-TG
96950 TTAAATTTAAAATTT
1 TTAAATTTAAAATTT
96965 CCAAATACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
15 1 0.02
16 8 0.15
17 43 0.78
18 1 0.02
19 2 0.04
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (16 bp):
TTAAATTTAAAATTTG
Found at i:98203 original size:25 final size:26
Alignment explanation
Indices: 98162--98222 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
98152 TTTTGAAAGA
* *
98162 AAAAGGGAAAGGTAAAACTG-TTTTT
1 AAAAGGGAAAGGCAAAAATGATTTTT
** *
98187 TTAAGGGAATGGCAAAAATGATTTTT
1 AAAAGGGAAAGGCAAAAATGATTTTT
98213 AAAAGGGAAA
1 AAAAGGGAAA
98223 ATCTGACTTA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.46, C:0.03, G:0.25, T:0.26
Consensus pattern (26 bp):
AAAAGGGAAAGGCAAAAATGATTTTT
Found at i:98734 original size:29 final size:28
Alignment explanation
Indices: 98687--98866 Score: 110
Period size: 30 Copynumber: 6.1 Consensus size: 28
98677 GAAATCATAT
* *
98687 TTTGACCCCTAAACTTTTCAAAAATTACA
1 TTTGAACCCTGAAC-TTTCAAAAATTACA
* * *
98716 TTTGGACTCCTGAACTTTCCAAAATCACA
1 TTTGAAC-CCTGAACTTTCAAAAATTACA
* * *
98745 TTTCTAAACCCTAAACTTTTAAAAATTACA
1 -TT-TGAACCCTGAACTTTCAAAAATTACA
* *
98775 TTTTTAACCCTGAATTTTCTAAAAATTACA
1 -TTTGAACCCTGAACTTTC-AAAAATTACA
* * *
98805 TTTTAACCTCCGAACTTCACAAAAATT-CTA
1 TTTGAACC-CTGAACTT-TCAAAAATTAC-A
* * * *
98835 TTTGTGACCCCGAACTTCCAAAAATTCCA
1 TTTG-AACCCTGAACTTTCAAAAATTACA
98864 TTT
1 TTT
98867 TTGACCCCGA
Statistics
Matches: 121, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
29 50 0.41
30 64 0.53
31 7 0.06
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (28 bp):
TTTGAACCCTGAACTTTCAAAAATTACA
Found at i:98787 original size:59 final size:61
Alignment explanation
Indices: 98666--98807 Score: 157
Period size: 60 Copynumber: 2.4 Consensus size: 61
98656 AAGAGGTCAT
* * * * * *
98666 TGAACTATCTAGAAATCATATTT-TGACCCCTAAACTTTTCAAAAATTACATTTGGACTCC
1 TGAACTTTCTAAAAATCACATTTCTAAACCCTAAACTTTTCAAAAATTACATTTGAACTCC
* *
98726 TGAACTTTC-CAAAATCACATTTCTAAACCCTAAACTTTT-AAAAATTACATTTTTAAC-CC
1 TGAACTTTCTAAAAATCACATTTCTAAACCCTAAACTTTTCAAAAATTACA-TTTGAACTCC
* *
98785 TGAATTTTCTAAAAATTACATTT
1 TGAACTTTCTAAAAATCACATTT
98808 TAACCTCCGA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
59 30 0.44
60 38 0.56
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.37
Consensus pattern (61 bp):
TGAACTTTCTAAAAATCACATTTCTAAACCCTAAACTTTTCAAAAATTACATTTGAACTCC
Found at i:98886 original size:30 final size:29
Alignment explanation
Indices: 98765--99073 Score: 157
Period size: 30 Copynumber: 10.4 Consensus size: 29
98755 CTAAACTTTT
* * * *
98765 AAAAATTACATTTTTAACCCTGAATTTTCT
1 AAAAATTCCATTTTTAACCCCGAA-CTTCC
*
98795 AAAAATTACA-TTTTAACCTCCGAACTTCAC
1 AAAAATTCCATTTTTAACC-CCGAACTTC-C
* * *
98825 AAAAATTCTATTTGTGACCCCGAACTTCC
1 AAAAATTCCATTTTTAACCCCGAACTTCC
* **
98854 AAAAATTCCATTTTTGACCCCGATTTTTCC
1 AAAAATTCCATTTTTAACCCCGA-ACTTCC
* * *
98884 AAAGATTCCATTTTTTTACCTCGAACTTCC
1 AAAAATTCCA-TTTTTAACCCCGAACTTCC
* *
98914 AAAAATTCCA-TTTTAACCCC-AATTTTTC
1 AAAAATTCCATTTTTAACCCCGAA-CTTCC
** * * *
98942 TTAAATT-TACTATTTT-ACCCTCGGA-TGTCT
1 AAAAATTCCA-T-TTTTAACCC-CGAACT-TCC
* * *
98972 AAAAATTCCATTTTTAACCTCGAAGTTTC
1 AAAAATTCCATTTTTAACCCCGAACTTCC
** * *
99001 AAAAATAACATTTTTAACCCCAAACTTTTC
1 AAAAATTCCATTTTTAACCCCGAAC-TTCC
* * *
99031 AAAAATTACCA-TGTTACCCCCG-AGTGTCC
1 AAAAATT-CCATTTTTAACCCCGAACT-TCC
99060 AAAAATTACCATTT
1 AAAAATT-CCATTT
99074 GCCCTTGAAG
Statistics
Matches: 213, Mismatches: 47, Indels: 38
0.71 0.16 0.13
Matches are distributed among these distances:
27 3 0.01
28 17 0.08
29 80 0.38
30 92 0.43
31 21 0.10
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.37
Consensus pattern (29 bp):
AAAAATTCCATTTTTAACCCCGAACTTCC
Found at i:99048 original size:88 final size:87
Alignment explanation
Indices: 98881--99073 Score: 210
Period size: 88 Copynumber: 2.2 Consensus size: 87
98871 CCCCGATTTT
* * ** * *
98881 TCCAAAGATTCCATTTTTTTACCTCGAACTTCCAAAAATTCCATTTTAACCCCAATTTTTCTTAA
1 TCCAAAAATTCCA-TTTTTAACCTCGAACTTCCAAAAATAACATTTTAACCCCAACTTTTCTAAA
* * * *
98946 ATTTACTATTTTACCCTCG-GATG
65 AATTACCATGTTACCCCCGAG-TG
* * *
98969 TCTAAAAATTCCATTTTTAACCTCGAAGTTTCAAAAATAACATTTTTAACCCCAAACTTTTC-AA
1 TCCAAAAATTCCATTTTTAACCTCGAACTTCCAAAAATAACA-TTTTAACCCC-AACTTTTCTAA
99033 AAATTACCATGTTACCCCCGAGTG
64 AAATTACCATGTTACCCCCGAGTG
99057 TCCAAAAATTACCATTT
1 TCCAAAAATT-CCATTT
99074 GCCCTTGAAG
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
87 24 0.28
88 49 0.56
89 14 0.16
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (87 bp):
TCCAAAAATTCCATTTTTAACCTCGAACTTCCAAAAATAACATTTTAACCCCAACTTTTCTAAAA
ATTACCATGTTACCCCCGAGTG
Found at i:99085 original size:29 final size:28
Alignment explanation
Indices: 99030--99122 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 28
99020 CCAAACTTTT
99030 CAAAAATTACCATGTTACCCCCGAGTGTC
1 CAAAAATTACCAT-TTACCCCCGAGTGTC
* **
99059 CAAAAATTACCATTTGCCCTTGAAGTGTC
1 CAAAAATTACCATTTACCCCCG-AGTGTC
* *
99088 C-AAAATTACCATTTTACCCCTGAGTATC
1 CAAAAATTACCA-TTTACCCCCGAGTGTC
99116 CAAAAAT
1 CAAAAAT
99123 CGCATTTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (28 bp):
CAAAAATTACCATTTACCCCCGAGTGTC
Found at i:99117 original size:28 final size:28
Alignment explanation
Indices: 99032--99120 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 28
99022 AAACTTTTCA
* *
99032 AAAATTACCATGTTACCCCCGAGTGTCC
1 AAAATTACCATTTTACCCCTGAGTGTCC
* *
99060 AAAAATTACCA-TTTGCCCTTGAAGTGTCC
1 -AAAATTACCATTTTACCCCTG-AGTGTCC
*
99089 AAAATTACCATTTTACCCCTGAGTATCC
1 AAAATTACCATTTTACCCCTGAGTGTCC
99117 AAAA
1 AAAA
99121 ATCGCATTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCTGAGTGTCC
Found at i:99699 original size:15 final size:15
Alignment explanation
Indices: 99679--99726 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
99669 GTTGTCCCCT
99679 AAATAATTAAATAAA
1 AAATAATTAAATAAA
*
99694 AAATAAATAAATAAA
1 AAATAATTAAATAAA
*
99709 AAGTAATTGAAAGTAAA
1 AAATAATT-AAA-TAAA
99726 A
1 A
99727 CAATTGATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 20 0.71
16 3 0.11
17 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAATAATTAAATAAA
Found at i:105954 original size:25 final size:25
Alignment explanation
Indices: 105920--105967 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105910 CATTTTGGTC
* *
105920 ATTTATTTTATCTTTTTAAAATTTA
1 ATTTAATTTAACTTTTTAAAATTTA
*
105945 ATTTAATTTAACTTTTTAGAATT
1 ATTTAATTTAACTTTTTAAAATT
105968 ATTTTTAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (25 bp):
ATTTAATTTAACTTTTTAAAATTTA
Found at i:107326 original size:18 final size:17
Alignment explanation
Indices: 107302--107401 Score: 110
Period size: 18 Copynumber: 5.7 Consensus size: 17
107292 CCAAACTCCC
107302 TTTAAATTTATTTTAAAA
1 TTTAAATTTATTTT-AAA
* * *
107320 ATTAAATTTGTTTAAAAA
1 TTTAAATTTATTT-TAAA
*
107338 TTTAAATTTATTTTGAA
1 TTTAAATTTATTTTAAA
* *
107355 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
107372 TTTAAATTTATTTTCAAA
1 TTTAAATTTATTTT-AAA
*
107390 TTTAAAATTATT
1 TTTAAATTTATT
107402 ATATATAAAG
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
17 29 0.43
18 38 0.57
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:107335 original size:17 final size:19
Alignment explanation
Indices: 107302--107395 Score: 76
Period size: 17 Copynumber: 5.3 Consensus size: 19
107292 CCAAACTCCC
*
107302 TTTAAATTTATTTTAAAAA
1 TTTAAATTTAGTTTAAAAA
107321 -TTAAATTT-GTTTAAAAA
1 TTTAAATTTAGTTTAAAAA
**
107338 TTTAAATTTA-TTT-TGAA
1 TTTAAATTTAGTTTAAAAA
* *
107355 TTTAAATTTAATTT--AAG
1 TTTAAATTTAGTTTAAAAA
**
107372 TTTAAATTTA-TTTTCAAA
1 TTTAAATTTAGTTTAAAAA
107390 TTTAAA
1 TTTAAA
107396 ATTATTATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
16 3 0.05
17 31 0.48
18 30 0.47
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTAAATTTAGTTTAAAAA
Found at i:107346 original size:6 final size:6
Alignment explanation
Indices: 107335--107395 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
107325 ATTTGTTTAA
* * *
107335 AAATTT AAATTT -ATTTT GAATTT AAATTT -AATTT AAGTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
*
107381 -ATTTT CAAATTT AAA
1 AAATTT -AAATTT AAA
107396 ATTATTATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
5 13 0.30
6 27 0.61
7 4 0.09
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (6 bp):
AAATTT
Found at i:107393 original size:52 final size:53
Alignment explanation
Indices: 107302--107401 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 53
107292 CCAAACTCCC
* * *
107302 TTTAAATTTATTTTAAAAATTAAATTTGTTTAAAAATTTAAATTTATTTTGAA
1 TTTAAATTTAATTTAAAAATTAAATTTATTTAAAAATTTAAAATTATTTTGAA
** **
107355 TTTAAATTTAATTT-AAGTTTAAATTTATTTTCAAATTTAAAATTATT
1 TTTAAATTTAATTTAAAAATTAAATTTATTTAAAAATTTAAAATTATT
107402 ATATATAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 27 0.68
53 13 0.32
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (53 bp):
TTTAAATTTAATTTAAAAATTAAATTTATTTAAAAATTTAAAATTATTTTGAA
Done.