Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010535.1 Kokia drynarioides strain JFW-HI SEQ_125453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40


Found at i:419 original size:216 final size:216

Alignment explanation


    Indices: 1--1123  Score: 1297
    Period size: 216  Copynumber: 5.2  Consensus size: 216

                                                              *             *
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT-ATTGGTCCTTGGCCGAACTTT
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCA-TGGTTCTTGGCCGAACTTC

                   *            *       *        * *                 *       
         65 TGAACTTCTCAAACTTTTACCAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
         65 TGAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCC

                       *     *     *   *          *      *   *               
        130 ATTCCTTCGAGGAATTTGTCGAACATTGCATGCTCGAGAAATCGCTTCAATTGGTCCAAATAGTT
        130 ATTCCTTCGAGCAATTTTTCGAAAATTCCATGCTCGAGGAATCGCATCATTTGGTCCAAATAGTT

             *               *    
        195 TATCATTTTGTAAACAAGTTTT
        195 TGTCATTTTGTAAACAACTTTT

                  *  *      *       **                               *      *
        217 TGTCTTCGAGTTAAAATCTTATTTACGTGAGAATTGTTTGTCTCATGGTTCTTGGCCAAACTTCC
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCATGGTTCTTGGCCGAACTTCT

            *           *      *     *  *                                    
        282 AAACTTGTCAAAGTTTTACAAGTTCATGAATAACTTAGGTTCCTTAAAGTATTCAAAACGATCCA
         66 GAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCCA

                                       * *                       *    *      
        347 TTCCTTCGAGCAATTTTTCGAAAATTCAAAGCTCGAGGAATCGCATCATTTGGACCAATTAGTTT
        131 TTCCTTCGAGCAATTTTTCGAAAATTCCATGCTCGAGGAATCGCATCATTTGGTCCAAATAGTTT

                               * 
        412 GTCATTTTGTAAACAACTTGT
        196 GTCATTTTGTAAACAACTTTT

                      *  *      *                       *          **    *  *
        433 TGTCTTTGAAATATAAACTTTTTTTGGTGAGAATTGTTTGTCTCTTGGTTCTTGGATGAACATCC
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCATGGTTCTTGGCCGAACTTCT

                 *  *               *  *                                  *  
        498 GAACTGGTAAAACTTTTACGAGTTATTTTATAACTTAGGTTCCTTAAAGTATTCAAAACGATGCA
         66 GAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCCA

                      *           *    *  *  *                               
        563 TTCCTTCGAGAAATTTTTCGAATATTCGATTCTTG-GGAAATCGCATCATTTGGTCCAAATAGTT
        131 TTCCTTCGAGCAATTTTTCGAAAATTCCATGCTCGAGG-AATCGCATCATTTGGTCCAAATAGTT

                                  *
        627 TGTCATTTTGTAAA-ACACTTTC
        195 TGTCATTTTGTAAACA-ACTTTT

             *                                                *     *        
        649 TATCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT-ATTGGTCCTTGGTCGAACTTC
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCA-TGGTTCTTGGCCGAACTTC

                 *           *          *     *  *                   * *   * 
        713 TGAACATGTCAAACTTTAACGAGTTCTTCTATAAGTTCGGTTCCTTAAAGTATTCAAGATGATAC
         65 TGAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCC

                    *  *     **    **                   *           **       
        778 ATTCCTTCAAGGAATTTCCCGAACTTTCCATGCTC-AGGAAATCACATCATTTGGTTTAAATAGT
        130 ATTCCTTCGAGCAATTTTTCGAAAATTCCATGCTCGAGG-AATCGCATCATTTGGTCCAAATAGT

              *                    
        842 TTCTCATTTTGTAAACAACTTTT
        194 TTGTCATTTTGTAAACAACTTTT

                   *                **                              *   *    
        865 TGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTCATGGTTCTTGGCTGAAATTCT
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCATGGTTCTTGGCCGAACTTCT

             *      *   *               *                           *  *     
        930 GGACTTGTGAAAGTTTTACGAGTTCTTGAATAACTTAGGTTCCTTAAAGTATTCAACACAATCCA
         66 GAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCCA

                               *    *     *       *        *     *     *     
        995 TTCCTTCGAGCAA-TTTTCTAAACGTTCCACGCTCGAGAAATCGCATTATTTGATCCAATTAGTT
        131 TTCCTTCGAGCAATTTTTCGAAA-ATTCCATGCTCGAGGAATCGCATCATTTGGTCCAAATAGTT

                                  
       1059 TGTCATTTTGTAAACAAC-TTT
        195 TGTCATTTTGTAAACAACTTTT

                  *         *                           
       1080 TGTCTTCGAATTAAAATCTTATTTTGGTGAGAATTGTTTGTCTC
          1 TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTC

       1124 TTAGTTCT


Statistics
Matches: 755,  Mismatches: 143, Indels: 19
        0.82            0.16        0.02

Matches are distributed among these distances:
 215   50  0.07
 216  700  0.93
 217    5  0.01

ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40


Consensus pattern (216 bp):   
TGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTCATGGTTCTTGGCCGAACTTCT
GAACTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAAAGTATTCAAAACGATCCA
TTCCTTCGAGCAATTTTTCGAAAATTCCATGCTCGAGGAATCGCATCATTTGGTCCAAATAGTTT
GTCATTTTGTAAACAACTTTT

Done.