Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010546.1 Kokia drynarioides strain JFW-HI SEQ_125466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2301
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1737 original size:22 final size:20

Alignment explanation


    Indices: 1712--1764  Score: 61
    Period size: 22  Copynumber: 2.5  Consensus size: 20

       1702 TTTACTTTCT

                                  
       1712 TTTTCTTTTTGTGCTTTAATGG
          1 TTTTCTTTTT-TGCTTT-ATGG

                               * 
       1734 TTTTCTGTTTTTGCTTTATTG
          1 TTTTCT-TTTTTGCTTTATGG

                      
       1755 TTTTGCTTTT
          1 TTTT-CTTTT

       1765 AATTTTAGTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  21   10  0.36
  22   14  0.50
  23    4  0.14

ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70


Consensus pattern (20 bp):   
TTTTCTTTTTTGCTTTATGG
Done.