genome.fa.s10547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010547.1 Kokia drynarioides strain JFW-HI SEQ_125467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149239

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111--157	4	11.5	4	81	4	58	2	21	0	76	0.89
109--157	25	2.0	25	87	0	71	2	22	0	75	0.90
114--163	12	4.1	12	87	5	64	4	18	0	78	0.91
443--477	11	2.8	13	83	16	56	8	5	17	68	1.35
5444--5541	50	1.9	51	97	2	189	47	11	14	26	1.77
14664--14707	23	1.9	23	81	9	54	15	13	11	59	1.62
26360--26398	21	1.9	21	94	5	71	30	15	10	43	1.80
44482--44515	15	2.3	15	89	0	50	50	35	0	14	1.44
53094--53140	22	2.1	22	88	0	67	74	0	6	19	1.03
61730--61887	50	3.2	50	82	3	194	23	15	24	36	1.94
61730--61850	25	4.8	25	71	0	98	23	14	23	38	1.92
65982--66022	21	2.0	21	90	0	64	34	21	9	34	1.87
70583--70679	40	2.4	40	91	0	149	22	24	9	43	1.83
70706--70849	41	3.5	41	97	0	270	27	25	10	36	1.88
76664--76723	21	2.9	20	78	7	66	26	15	23	35	1.94
80495--80931	194	2.3	194	82	3	504	28	18	24	27	1.98
90102--90173	26	2.8	26	80	2	74	41	6	18	33	1.77
93811--93835	2	12.5	2	100	0	50	52	0	0	48	1.00
94037--94105	22	3.1	22	78	2	66	43	18	24	13	1.86
96536--96570	17	1.9	19	88	11	56	48	5	0	45	1.26
124750--125228	158	3.0	154	79	11	430	29	23	23	23	1.99
127151--127181	13	2.4	13	94	0	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133304--133372	24	2.9	24	91	0	111	24	13	7	55	1.63
135507--135539	16	1.9	18	88	11	52	9	3	27	60	1.42
135962--136208	111	2.2	110	81	5	284	34	14	22	29	1.93

Tables:   1

The End!