Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001056.1 Kokia drynarioides strain JFW-HI SEQ_112301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2805
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:2572 original size:15 final size:15

Alignment explanation


    Indices: 2552--2590  Score: 53
    Period size: 14  Copynumber: 2.7  Consensus size: 15

       2542 GCACATCAAA

                        *  
       2552 CAAGAATTAATATAT
          1 CAAGAATTAATAAAT

                     *     
       2567 CAAGAA-TACTAAAT
          1 CAAGAATTAATAAAT

                      
       2581 CAAGAATTAA
          1 CAAGAATTAA

       2591 GCACACATAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 2
        0.80            0.12        0.08

Matches are distributed among these distances:
  14   12  0.60
  15    8  0.40

ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26


Consensus pattern (15 bp):   
CAAGAATTAATAAAT
Done.