Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010564.1 Kokia drynarioides strain JFW-HI SEQ_125486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7100
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31


Found at i:2818 original size:18 final size:17

Alignment explanation


    Indices: 2795--2830  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2785 TTTAAATTTG

                              
       2795 AATATTGTAGATTTTGGT
          1 AATATT-TAGATTTTGGT

                   *         
       2813 AATATTTGGATTTTGGT
          1 AATATTTAGATTTTGGT

             
       2830 A
          1 A

       2831 CGGATACATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17   11  0.65
  18    6  0.35

ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50


Consensus pattern (17 bp):   
AATATTTAGATTTTGGT
Done.