Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010566.1 Kokia drynarioides strain JFW-HI SEQ_125488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28


Found at i:384 original size:45 final size:45

Alignment explanation


    Indices: 233--361  Score: 231
    Period size: 45  Copynumber: 2.9  Consensus size: 45

        223 GCATAGCTCA

                     *          *  *                     
        233 TCAAGCCAATGATATCAGCCACAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                         
        278 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                   
        323 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCG
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCG

        362 TAATACTATA


Statistics
Matches: 81,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  45   81  1.00

ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
Done.