Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010568.1 Kokia drynarioides strain JFW-HI SEQ_125490, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6559
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.32

Warning! 91 characters in sequence are not A, C, G, or T


Found at i:2480 original size:18 final size:17

Alignment explanation


    Indices: 2438--2483  Score: 51
    Period size: 17  Copynumber: 2.7  Consensus size: 17

       2428 AAATATGATG

                  *          
       2438 TAAAGAAAGGAAAGAAA
          1 TAAAGAGAGGAAAGAAA

                               
       2455 -AGAA-AGAGGAGAAGAAA
          1 TA-AAGAGAGGA-AAGAAA

                        
       2472 TAAAGAGAGGAA
          1 TAAAGAGAGGAA

       2484 GGCAAAATTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 8
        0.73            0.03        0.24

Matches are distributed among these distances:
  16    6  0.25
  17   11  0.46
  18    7  0.29

ACGTcount: A:0.65, C:0.00, G:0.30, T:0.04


Consensus pattern (17 bp):   
TAAAGAGAGGAAAGAAA

Found at i:3858 original size:16 final size:16

Alignment explanation


    Indices: 3829--3862  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3819 ATTTAAAGAA

                            
       3829 AGGAAAGAACATAAAG
          1 AGGAAAGAACATAAAG

                             
       3845 AGGAGAAGAA-ATAAAG
          1 AGGA-AAGAACATAAAG

              
       3861 AG
          1 AG

       3863 AGGAATGCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16   12  0.71
  17    5  0.29

ACGTcount: A:0.62, C:0.03, G:0.29, T:0.06


Consensus pattern (16 bp):   
AGGAAAGAACATAAAG
Done.