Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010569.1 Kokia drynarioides strain JFW-HI SEQ_125491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.27

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:654 original size:3 final size:3

Alignment explanation


    Indices: 640--678  Score: 51
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        630 GATCGTAAGT

                                                  *            
        640 ATA ATA ATTA ATA ATA ATTA ATA ATA ATA TTA ATA ATA A
          1 ATA ATA A-TA ATA ATA A-TA ATA ATA ATA ATA ATA ATA A

        679 AGTATTAATA


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   3   26  0.81
   4    6  0.19

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (3 bp):   
ATA

Found at i:655 original size:10 final size:10

Alignment explanation


    Indices: 640--678  Score: 60
    Period size: 10  Copynumber: 3.7  Consensus size: 10

        630 GATCGTAAGT

                      
        640 ATAATAATTA
          1 ATAATAATTA

                      
        650 ATAATAATTA
          1 ATAATAATTA

                        
        660 ATAATAATATTA
          1 ATAAT-A-ATTA

                   
        672 ATAATAA
          1 ATAATAA

        679 AGTATTAATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  10   16  0.59
  11    2  0.07
  12    9  0.33

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (10 bp):   
ATAATAATTA

Found at i:686 original size:14 final size:14

Alignment explanation


    Indices: 656--694  Score: 55
    Period size: 14  Copynumber: 2.9  Consensus size: 14

        646 ATTAATAATA

                          
        656 ATTAATAAT-AA-T
          1 ATTAATAATAAAGT

                          
        668 ATTAATAATAAAGT
          1 ATTAATAATAAAGT

                    *    
        682 ATTAATAAAAAAG
          1 ATTAATAATAAAG

        695 GAAAATTGAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  12    9  0.38
  13    2  0.08
  14   13  0.54

ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33


Consensus pattern (14 bp):   
ATTAATAATAAAGT
Done.