Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010571.1 Kokia drynarioides strain JFW-HI SEQ_125493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2132
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:1408 original size:45 final size:45

Alignment explanation


    Indices: 1335--1426  Score: 157
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       1325 TGGAGGAGTA

                                   *                     
       1335 GAGTATTGCAGTGGCTCGTCAAATTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCAGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                     *         *                         
       1380 GAGTATTGCGGTGGCTCGTTAAACTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCAGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
       1425 GA
          1 GA

       1427 TGAGCTATGC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  45   44  1.00

ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33


Consensus pattern (45 bp):   
GAGTATTGCAGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.