Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010576.1 Kokia drynarioides strain JFW-HI SEQ_125501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 832

Length: 1387
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29


Found at i:440 original size:45 final size:45

Alignment explanation


    Indices: 295--464  Score: 198
    Period size: 45  Copynumber: 3.8  Consensus size: 45

        285 GCATAGCTCA

                                   *      *              
        295 TCAAGCCAAGGATATC-GCCTCAGTTTGACTAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                *          * *                           
        339 TCAACCCAAGGATATTAACCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                  *                                *   * 
        384 TCAAGCTAAGGATATCAGCCTCAATTTGACGAGCCACCGTAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

              *  **           *  * *     *      
        429 TCTAGGGAAGGATATCAGGCTGAGTTTGAGGAGCCA
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCA

        465 TCACGATACT


Statistics
Matches: 107,  Mismatches: 18, Indels: 1
        0.85            0.14        0.01

Matches are distributed among these distances:
  44   14  0.13
  45   93  0.87

ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
Done.