Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010577.1 Kokia drynarioides strain JFW-HI SEQ_125502, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5799
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:910 original size:21 final size:23

Alignment explanation


    Indices: 865--910  Score: 60
    Period size: 22  Copynumber: 2.1  Consensus size: 23

        855 ATAATATAAT

                                   
        865 TATAACATATGCTAAAATGTAAA
          1 TATAACATATGCTAAAATGTAAA

                       * *         
        888 TATAA-ATATGGTTAAAT-TAAA
          1 TATAACATATGCTAAAATGTAAA

              
        909 TA
          1 TA

        911 ATTAACTATC


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  21    6  0.29
  22   10  0.48
  23    5  0.24

ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35


Consensus pattern (23 bp):   
TATAACATATGCTAAAATGTAAA

Found at i:1047 original size:36 final size:36

Alignment explanation


    Indices: 956--1047  Score: 100
    Period size: 36  Copynumber: 2.6  Consensus size: 36

        946 TTTTTCTTAA

                  *                *  *       * 
        956 AATAAATATTTAAATT--TTTTATTTTTTTTAAATT
          1 AATAAAAATTTAAATTAATTTTAATTATTTTAAAAT

                      *                          
        990 AATAAAAA-TAAAATTACATTTTAATTATTTTAAAAT
          1 AATAAAAATTTAAATTA-ATTTTAATTATTTTAAAAT

                         *        
       1026 AATAAAAATTTAATTTAATTTT
          1 AATAAAAATTTAAATTAATTTT

       1048 TTTTTAAATT


Statistics
Matches: 47,  Mismatches: 7, Indels: 6
        0.78            0.12        0.10

Matches are distributed among these distances:
  33    6  0.13
  34    7  0.15
  36   28  0.60
  37    6  0.13

ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51


Consensus pattern (36 bp):   
AATAAAAATTTAAATTAATTTTAATTATTTTAAAAT
Done.