Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010578.1 Kokia drynarioides strain JFW-HI SEQ_125503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2778
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33


Found at i:434 original size:47 final size:47

Alignment explanation


    Indices: 379--474  Score: 174
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        369 TCAATTGACT

                                  *  *                     
        379 TAACATAGGTAATAGTTATCACTCCGTCCCTAATCAATTGTCTCACA
          1 TAACATAGGTAATAGTTATCACCCCATCCCTAATCAATTGTCTCACA

                                                           
        426 TAACATAGGTAATAGTTATCACCCCATCCCTAATCAATTGTCTCACA
          1 TAACATAGGTAATAGTTATCACCCCATCCCTAATCAATTGTCTCACA

              
        473 TA
          1 TA

        475 CTCATGTTTC


Statistics
Matches: 47,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.33, C:0.26, G:0.09, T:0.31


Consensus pattern (47 bp):   
TAACATAGGTAATAGTTATCACCCCATCCCTAATCAATTGTCTCACA

Found at i:2630 original size:13 final size:13

Alignment explanation


    Indices: 2612--2636  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2602 ACATAAGTAA

                         
       2612 ATCTATAAAAGTC
          1 ATCTATAAAAGTC

                        
       2625 ATCTATAAAAGT
          1 ATCTATAAAAGT

       2637 GATAAAATAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32


Consensus pattern (13 bp):   
ATCTATAAAAGTC
Done.