Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001059.1 Kokia drynarioides strain JFW-HI SEQ_112308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7653
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30

Warning! 46 characters in sequence are not A, C, G, or T


Found at i:7362 original size:2 final size:2

Alignment explanation


    Indices: 7355--7398  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       7345 AATGTTTGTT

                                                                          
       7355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
       7397 TA
          1 TA

       7399 CCTATTGATA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:7625 original size:2 final size:2

Alignment explanation


    Indices: 7618--7653  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       7608 AATAATAATA

                                                                 
       7618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.