genome.fa.s10590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010590.1 Kokia drynarioides strain JFW-HI SEQ_125517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70319

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181--219	6	6.5	6	87	0	51	23	30	0	46	1.53
1999--2128	44	2.9	45	86	2	181	20	22	13	44	1.85
5647--5924	30	9.2	30	81	4	265	39	21	5	34	1.76
5647--5891	92	2.7	90	81	3	287	39	20	5	34	1.76
5968--6044	28	2.8	25	73	22	66	19	12	3	63	1.44
7784--7826	17	2.5	17	92	3	68	20	25	2	51	1.60
11267--11299	11	3.0	11	95	0	57	63	0	30	6	1.18
12962--13009	24	2.0	24	87	0	69	18	33	2	45	1.61
13215--13264	19	2.5	21	78	12	61	38	0	2	60	1.09
13255--13307	19	2.7	19	76	2	61	35	0	7	56	1.28
22290--22331	16	2.4	18	76	11	52	52	0	2	45	1.13
24411--24448	18	2.2	17	95	4	67	55	13	5	26	1.59
24859--24898	13	3.1	13	89	7	55	40	20	5	35	1.74
26228--26629	50	7.9	50	74	11	255	17	31	15	35	1.91
26234--26584	105	3.4	103	72	14	287	17	31	16	35	1.92
26514--26634	49	2.4	49	81	8	129	19	34	14	32	1.91
27518--27594	23	3.4	23	83	13	90	2	20	0	76	0.90
28286--28314	13	2.3	13	94	5	51	0	17	0	82	0.66
29171--29205	17	1.9	19	88	11	56	51	8	17	22	1.72
32614--32974	29	12.6	29	73	15	182	34	4	25	34	1.78
32614--32974	58	6.3	58	80	9	312	34	4	25	34	1.78
32611--32833	87	2.6	88	76	17	241	34	6	25	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32768--32903	28	4.8	28	69	12	73	35	2	25	36	1.71
32930--33007	30	2.6	29	80	9	77	41	3	21	33	1.72
32667--33068	29	13.8	30	72	15	190	35	3	24	35	1.74
32999--33069	30	2.3	31	82	4	90	36	1	22	39	1.63
34891--34929	17	2.3	17	86	0	51	64	2	0	33	1.08
43882--43921	19	2.1	19	100	0	80	20	10	12	57	1.63
45437--45668	101	2.3	102	82	4	265	41	15	11	31	1.83
46338--46377	21	1.9	21	90	10	64	67	7	5	20	1.34
47363--47405	19	2.3	19	80	8	52	2	13	11	72	1.22
51557--51838	30	9.5	30	79	8	265	34	25	4	35	1.76
51556--51922	59	6.2	60	78	8	280	33	26	5	34	1.79
51805--51922	57	2.1	57	83	3	148	32	27	7	33	1.85
51936--51996	28	2.2	28	81	0	77	31	34	8	26	1.86
63840--64093	115	2.2	115	86	5	336	35	17	22	24	1.95
63955--64383	202	2.1	203	87	4	618	34	19	23	22	1.96
64732--64773	22	1.9	22	85	0	57	38	0	7	54	1.28
64744--64833	17	5.5	16	73	23	64	37	3	3	55	1.33
64754--64835	17	4.6	18	79	11	96	37	3	2	56	1.30
65621--65658	3	13.0	3	83	5	51	36	0	0	63	0.95
66131--66156	11	2.4	11	100	0	52	19	11	46	23	1.82
66758--67057	30	10.2	29	76	10	243	34	29	5	30	1.81
66758--67133	59	6.4	59	80	4	345	34	28	5	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66753--67141	117	3.3	118	81	6	382	33	29	5	31	1.81
66795--67162	30	12.6	29	73	12	181	33	28	5	31	1.81
66827--67109	29	9.7	28	71	16	116	33	28	5	32	1.80
67119--67178	28	2.2	28	87	3	86	35	30	10	25	1.88
69278--69408	12	10.8	12	67	8	59	49	3	3	42	1.39
69319--69408	37	2.5	37	92	1	155	48	3	4	43	1.39
69337--69399	20	3.3	20	64	20	53	47	4	3	44	1.40

Tables:   1

The End!