Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010592.1 Kokia drynarioides strain JFW-HI SEQ_125520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:885 original size:59 final size:59

Alignment explanation


    Indices: 789--1167  Score: 591
    Period size: 59  Copynumber: 6.4  Consensus size: 59

        779 GTCCCTGAAC

                                    *                                  
        789 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                          **                *        *                 
        848 CTTCCAAAAATTACTATTTTACCCTCGAATTCTCAAAAATCTCATTTTTGACCCCGAAG
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                           *                                           
        907 CTTCC-AAAATTACCATTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                                    *                            *     
        965 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCTCGAAG
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                *                                                *     
       1024 CTTCAAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCTCGAAG
          1 CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                                    *    *                    *        *
       1083 CTTCCAAAAATTACCGTTTTACCCCCGGACTT-CCAAAAATCCCATTTTTAACCCCGAAT
          1 CTTCCAAAAATTACCGTTTTACCCTC-GAATTCCCAAAAATCCCATTTTTGACCCCGAAG

                           *          
       1142 CTTCCAAAAATTACCATTTTATCCCT
          1 CTTCCAAAAATTACCGTTTTA-CCCT

       1168 AAACTTCCAA


Statistics
Matches: 296,  Mismatches: 21, Indels: 5
        0.92            0.07        0.02

Matches are distributed among these distances:
  58   55  0.19
  59  234  0.79
  60    7  0.02

ACGTcount: A:0.31, C:0.31, G:0.07, T:0.30


Consensus pattern (59 bp):   
CTTCCAAAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAG

Found at i:1084 original size:176 final size:177

Alignment explanation


    Indices: 789--1162  Score: 608
    Period size: 176  Copynumber: 2.1  Consensus size: 177

        779 GTCCCTGAAC

                                                                           * 
        789 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCA
          1 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCAA

                    *                 *        *                             
        854 AAAATTACTATTTTACCCTCGAATTCTCAAAAATCTCATTTTTGACCCCGAAGCTTCC-AAAATT
         66 AAAATTACCATTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCAAAAATT

                        *                         *         
        918 ACCATTTTACCCTC-GAATTCCCAAAAATCCCATTTTTGACCCCGAAG
        131 ACCATTTTACCCCCGGAATT-CCAAAAATCCCATTTTTAACCCCGAAG

                                                                 *           
        965 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCTCGAAGCTTCAA
          1 CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCAA

                     *                                     *                 
       1030 AAAATTACCGTTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCTCGAAGCTTCCAAAAATT
         66 AAAATTACCATTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCAAAAATT

               *             *                            *
       1095 ACCGTTTTACCCCCGGACTTCCAAAAATCCCATTTTTAACCCCGAAT
        131 ACCATTTTACCCCCGGAATTCCAAAAATCCCATTTTTAACCCCGAAG

                           *     
       1142 CTTCCAAAAATTACCATTTTA
          1 CTTCCAAAAATTACCGTTTTA

       1163 TCCCTAAACT


Statistics
Matches: 183,  Mismatches: 13, Indels: 3
        0.92            0.07        0.02

Matches are distributed among these distances:
 176  116  0.63
 177   63  0.34
 178    4  0.02

ACGTcount: A:0.32, C:0.31, G:0.07, T:0.30


Consensus pattern (177 bp):   
CTTCCAAAAATTACCGTTTTACCCCCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCAA
AAAATTACCATTTTACCCTCGAATTCCCAAAAATCCCATTTTTGACCCCGAAGCTTCCAAAAATT
ACCATTTTACCCCCGGAATTCCAAAAATCCCATTTTTAACCCCGAAG

Done.