Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010598.1 Kokia drynarioides strain JFW-HI SEQ_125529, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41


Found at i:511 original size:13 final size:14

Alignment explanation


    Indices: 481--515  Score: 54
    Period size: 14  Copynumber: 2.6  Consensus size: 14

        471 CAATATTTTT

                          
        481 ATTTAAAAAAATAA
          1 ATTTAAAAAAATAA

                   *      
        495 ATTTAAATAAA-AA
          1 ATTTAAAAAAATAA

                    
        508 ATTTAAAA
          1 ATTTAAAA

        516 TGCAAAATTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  13    9  0.47
  14   10  0.53

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (14 bp):   
ATTTAAAAAAATAA

Done.