Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01010601.1 Kokia drynarioides strain JFW-HI SEQ_125532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 333547
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Warning! 1 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:232249 original size:29 final size:28
Alignment explanation
Indices: 232232--232406 Score: 131
Period size: 29 Copynumber: 6.0 Consensus size: 28
232222 TGAAAGTTTT
* *
232232 GGGGTCAAAAATTGAATTTTTTGAGGTTC
1 GGGGT-AAAAATTGAATTTTTGGAAGTTC
*
232261 GAGGGT-AAAAGTGTAA-TTTTGGAAGTTTC
1 G-GGGTAAAAATTG-AATTTTTGGAAG-TTC
* *
232290 GGGGTTAAAAATGGAATTTTTGGTAGTTC
1 GGGG-TAAAAATTGAATTTTTGGAAGTTC
* *
232319 GGGGTCAAAAATGGAATTTTTGGAAGTTT
1 GGGGT-AAAAATTGAATTTTTGGAAGTTC
* *
232348 GGGGATAAAAATAT-AATTTTTGAAAATCTC
1 GGGG-TAAAAAT-TGAATTTTTGGAAGT-TC
* *
232378 GAGGTTAAAAATGGAATTTTTGGACAGTT
1 G-GGGTAAAAATTGAATTTTTGGA-AGTT
232407 TAGGGATCTC
Statistics
Matches: 117, Mismatches: 16, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
28 17 0.15
29 59 0.50
30 37 0.32
31 4 0.03
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (28 bp):
GGGGTAAAAATTGAATTTTTGGAAGTTC
Found at i:232250 original size:87 final size:87
Alignment explanation
Indices: 232151--232399 Score: 227
Period size: 87 Copynumber: 2.8 Consensus size: 87
232141 ATTCGAGGGT
* *
232151 AAAATGGTAATTTTTAGAGTTTCGAGGTTAAAAATATAGTTTTGGACA-TCTAGGGG-T-AAAAT
1 AAAATGG-AATTTTTAGAGTTTCGAGGATAAAAATATAATTTTGGA-AGTCTAGGGGTTAAAAAT
*
232213 GGTAAATTTTGAAAGTTTTGGGGTCA
64 GG-AAATTTTGAAAG-TTCGGGGTCA
* * * * * * * *
232239 AAAATTGAATTTTTTGAGGTTCGAGGGTAAAAGTGTAATTTTGGAAGTTTCGGGGTTAAAAATGG
1 AAAATGGAATTTTTAGAGTTTCGAGGATAAAAATATAATTTTGGAAGTCTAGGGGTTAAAAATGG
* **
232304 AATTTTTGGTAGTTCGGGGTCA
66 AAATTTTGAAAGTTCGGGGTCA
* * * * * *
232326 AAAATGGAATTTTTGGAAGTTT-GGGGATAAAAATATAATTTTTGAAAATCTCGAGGTTAAAAAT
1 AAAATGGAATTTTTAG-AGTTTCGAGGATAAAAATATAA-TTTTGGAAGTCTAGGGGTTAAAAAT
*
232390 GGAATTTTTG
64 GGAAATTTTG
232400 GACAGTTTAG
Statistics
Matches: 132, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
86 1 0.01
87 73 0.55
88 51 0.39
89 7 0.05
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.37
Consensus pattern (87 bp):
AAAATGGAATTTTTAGAGTTTCGAGGATAAAAATATAATTTTGGAAGTCTAGGGGTTAAAAATGG
AAATTTTGAAAGTTCGGGGTCA
Found at i:235486 original size:16 final size:15
Alignment explanation
Indices: 235459--235488 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
235449 TCCAAAACTC
235459 ATAAAATAATATAAA
1 ATAAAATAATATAAA
235474 ATAAAATTAATATAA
1 ATAAAA-TAATATAA
235489 TTAATCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAAATAATATAAA
Found at i:237474 original size:23 final size:23
Alignment explanation
Indices: 237447--237491 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
237437 AACATCTAAC
*
237447 CAAACTAA-CATTATAAGTTTCAA
1 CAAAC-AACCATTATAACTTTCAA
*
237470 CAAACAACCATTGTAACTTTCA
1 CAAACAACCATTATAACTTTCA
237492 CATACTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.29
Consensus pattern (23 bp):
CAAACAACCATTATAACTTTCAA
Found at i:240639 original size:20 final size:20
Alignment explanation
Indices: 240619--240683 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
240609 TAAGATTTCT
*
240619 ATACCTTACTCAAAGTATCT
1 ATACCTTACTCAAAGTATCA
*
240639 ATACTTTA-TCCAAAGTATCA
1 ATACCTTACT-CAAAGTATCA
** *
240659 ATAAATTCCTCAAAGTATCA
1 ATACCTTACTCAAAGTATCA
240679 ATACC
1 ATACC
240684 ATGCCACCAG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (20 bp):
ATACCTTACTCAAAGTATCA
Found at i:242366 original size:29 final size:30
Alignment explanation
Indices: 242334--242398 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
242324 TAGTCTTTCA
* *
242334 ACTTTT-AAAATTTACACTTTAACCCCATC
1 ACTTTTGAAAATTCACACATTAACCCCATC
* * *
242363 ACTTTTGAATATTCACACATTAACCTCGTC
1 ACTTTTGAAAATTCACACATTAACCCCATC
242393 ACTTTT
1 ACTTTT
242399 CACTTTTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (30 bp):
ACTTTTGAAAATTCACACATTAACCCCATC
Found at i:244855 original size:20 final size:18
Alignment explanation
Indices: 244830--244868 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
244820 TCGAAAAAAA
244830 GTCAACAATCAAAGTCAATG
1 GTCAACAATC--AGTCAATG
*
244850 GTCAACGATCAGTCAATG
1 GTCAACAATCAGTCAATG
244868 G
1 G
244869 CCGGTCAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (18 bp):
GTCAACAATCAGTCAATG
Found at i:245051 original size:25 final size:25
Alignment explanation
Indices: 245020--245070 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
245010 ATAATAAGGG
245020 TTTTAAAGGATTTAGGTCATTGGGT
1 TTTTAAAGGATTTAGGTCATTGGGT
* **
245045 TTTTAAAGGGTTTAGGTTGTTGGGT
1 TTTTAAAGGATTTAGGTCATTGGGT
245070 T
1 T
245071 ATTGATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (25 bp):
TTTTAAAGGATTTAGGTCATTGGGT
Found at i:245990 original size:51 final size:51
Alignment explanation
Indices: 245884--246034 Score: 126
Period size: 50 Copynumber: 3.0 Consensus size: 51
245874 CTTGTGTAAA
* * *
245884 TTGTCTCCAAGGTCACGACATTCCTCTACTGAAGTCGCGACACCAAGCTAC
1 TTGTCCCCAAGGTCACGACACTCCCCTACTGAAGTCGCGACACCAAGCTAC
** * * *
245935 -TGTCCCCAAGGTCACGACACTCCCCTGTTTGAAGTTGTGACACCAAG-TTC
1 TTGTCCCCAAGGTCACGACACTCCCCT-ACTGAAGTCGCGACACCAAGCTAC
* ** * * * * * *
245985 TTGTCCCCATGGTTGCAACATTCACCTACTGAAGTCACGATATCAAGCTA
1 TTGTCCCCAAGGTCACGACACTCCCCTACTGAAGTCGCGACACCAAGCTA
246035 TTACTTCCAA
Statistics
Matches: 75, Mismatches: 22, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
50 38 0.51
51 37 0.49
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (51 bp):
TTGTCCCCAAGGTCACGACACTCCCCTACTGAAGTCGCGACACCAAGCTAC
Found at i:278716 original size:9 final size:9
Alignment explanation
Indices: 278698--278728 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
278688 AGAATATATG
*
278698 AAAATGTTT
1 AAAATTTTT
278707 AAAATTTTT
1 AAAATTTTT
278716 AAAATTTTT
1 AAAATTTTT
278725 AAAA
1 AAAA
278729 AATAATGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (9 bp):
AAAATTTTT
Found at i:288676 original size:14 final size:14
Alignment explanation
Indices: 288653--288701 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
288643 TATTGCTATT
*
288653 TTTTTGTTGTTTTTG
1 TTTTT-TTGTTGTTG
288668 TTTTTTTGTTGTTG
1 TTTTTTTGTTGTTG
* *
288682 TTATTTTTGCTGCTG
1 TT-TTTTTGTTGTTG
288697 TTTTT
1 TTTTT
288702 GCAATTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 13 0.43
15 17 0.57
ACGTcount: A:0.02, C:0.04, G:0.18, T:0.76
Consensus pattern (14 bp):
TTTTTTTGTTGTTG
Found at i:288688 original size:17 final size:17
Alignment explanation
Indices: 288649--288689 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
288639 AATATATTGC
*
288649 TATTTTTTTGTTGTTTT
1 TATTTTTTTGTTGTTGT
*
288666 TGTTTTTTTGTTGTTGT
1 TATTTTTTTGTTGTTGT
288683 TATTTTT
1 TATTTTT
288690 GCTGCTGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.05, C:0.00, G:0.15, T:0.80
Consensus pattern (17 bp):
TATTTTTTTGTTGTTGT
Found at i:294718 original size:84 final size:85
Alignment explanation
Indices: 294620--294783 Score: 251
Period size: 84 Copynumber: 1.9 Consensus size: 85
294610 TTAAGTCATT
*
294620 TTTTTCACTCAATTAAGCACTTGAACTTTCAAAATGAATAAAAAAAACCCACAAACTTCTTCAAA
1 TTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGAATAAAAAAAACCCACAAACTTCTT-AAA
*
294685 -AAAA-ATTTAAGCCCATTCC
65 GAAAACAATTAAGCCCATTCC
* * * *
294704 TTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGCATTAAAAAAGCCCTCAAACTTCTTAAAG
1 TTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGAATAAAAAAAACCCACAAACTTCTTAAAG
294769 AAAACAATTAAGCCC
66 AAAACAATTAAGCCC
294784 CTGCTTTTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
83 3 0.04
84 60 0.83
85 9 0.12
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.28
Consensus pattern (85 bp):
TTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGAATAAAAAAAACCCACAAACTTCTTAAAG
AAAACAATTAAGCCCATTCC
Found at i:294824 original size:88 final size:84
Alignment explanation
Indices: 294620--294837 Score: 249
Period size: 84 Copynumber: 2.5 Consensus size: 84
294610 TTAAGTCATT
* *
294620 TTTTTCACTCAATTAAGCACTTGAACTTTCAAAATGAATAAAAAAAACCCACAAACTTCTTCAAA
1 TTTTCCACTCAATTAAGCACTTGAACTTTCAAAATGCATAAAAAAAACCCACAAACTTCTTCAAA
*
294685 AAAAATTTAAGCCCATTCC
66 AAAAAATTAAGCCCATTCC
* * * *
294704 TTTTGCACTCAATTAAGCACTTGAACTTTCAAAATGCATTAAAAAAGCCCTCAAACTTCTT-AAA
1 TTTTCCACTCAATTAAGCACTTGAACTTTCAAAATGCATAAAAAAAACCCACAAACTTCTTCAAA
* **
294768 GAAAACAATTAAGCCCCTGCTTTT
66 -AAAA-AATTAAG-CCC--ATTCC
* ** * *
294792 TTTTCCATTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAA
1 TTTTCCACTCAATTAAGCACTTGAACTTTCAAAATGCATAAAAAAA
294838 TTCCTTAAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
83 3 0.03
84 60 0.53
85 6 0.05
86 3 0.03
88 42 0.37
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (84 bp):
TTTTCCACTCAATTAAGCACTTGAACTTTCAAAATGCATAAAAAAAACCCACAAACTTCTTCAAA
AAAAAATTAAGCCCATTCC
Found at i:295013 original size:40 final size:38
Alignment explanation
Indices: 294926--295014 Score: 90
Period size: 40 Copynumber: 2.2 Consensus size: 38
294916 TTTTAGAAGA
294926 AAAATTATATTTTAATAAAAATATAAAAATTATTAAAAATT
1 AAAATT-T-TTTTAATAAAAATATAAAAATTA-TAAAAATT
* * *
294967 AGAATTTTTTTTATAAAAATCGTAAAAATTA-AAAAATTGT
1 AAAATTTTTTTAATAAAAAT-ATAAAAATTATAAAAA-T-T
295007 AAAATTTT
1 AAAATTTT
295015 ATAGAAATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
38 5 0.12
39 13 0.32
40 18 0.44
41 5 0.12
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.40
Consensus pattern (38 bp):
AAAATTTTTTTAATAAAAATATAAAAATTATAAAAATT
Found at i:295306 original size:28 final size:29
Alignment explanation
Indices: 295260--295355 Score: 81
Period size: 29 Copynumber: 3.3 Consensus size: 29
295250 TTACATTTTG
*
295260 TATAATTTTCTTAGGACTT-TATAAAGTTT
1 TATAATTTTTTTAGGACTTCTATAAA-TTT
* *
295289 TATAATTTTTTTA-TACTTCTATAGATTT
1 TATAATTTTTTTAGGACTTCTATAAATTT
* * * *
295317 TAT-ATTTTTTTACGATTTTTATAAAATTC
1 TATAATTTTTTTAGGACTTCTAT-AAATTT
*
295346 TACAATTTTT
1 TATAATTTTT
295356 ATGTATATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
27 9 0.17
28 16 0.30
29 23 0.43
30 6 0.11
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.57
Consensus pattern (29 bp):
TATAATTTTTTTAGGACTTCTATAAATTT
Found at i:308060 original size:46 final size:46
Alignment explanation
Indices: 307993--308085 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
307983 CCATCGCAAC
307993 TTTGCTCGAGCTTCTTCCTCGACATCATTTGGGTAATATTGTCCCT
1 TTTGCTCGAGCTTCTTCCTCGACATCATTTGGGTAATATTGTCCCT
308039 TTTGCTCGAGCTTCTTCCTCGACATCATTTGGGTAATATTGTCCCT
1 TTTGCTCGAGCTTCTTCCTCGACATCATTTGGGTAATATTGTCCCT
308085 T
1 T
308086 CAATCCATCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.42
Consensus pattern (46 bp):
TTTGCTCGAGCTTCTTCCTCGACATCATTTGGGTAATATTGTCCCT
Found at i:310041 original size:29 final size:29
Alignment explanation
Indices: 310006--310110 Score: 165
Period size: 29 Copynumber: 3.6 Consensus size: 29
309996 ACAAAATAAT
* **
310006 AACATAAGTTACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAATATAACATTTCA
310035 AACATAAGTGACTAAAATATAACATTTCA
1 AACATAAGTGACTAAAATATAACATTTCA
*
310064 AATATAAGTGACTAAAATATAACATTTCA
1 AACATAAGTGACTAAAATATAACATTTCA
*
310093 AACATAAGTGACAAAAAT
1 AACATAAGTGACTAAAAT
310111 GTAATCTGAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.27
Consensus pattern (29 bp):
AACATAAGTGACTAAAATATAACATTTCA
Found at i:314597 original size:31 final size:30
Alignment explanation
Indices: 314540--314624 Score: 102
Period size: 32 Copynumber: 2.8 Consensus size: 30
314530 AAAACTAAAT
*
314540 AAAATCTGAGAAAATCCAAAGA-GC-AAACC
1 AAAATCTGACAAAATCCAAA-ATGCAAAACC
314569 AAAATCTGAACAAAATCCCAAAATGCAAAACC
1 AAAATCTG-ACAAAAT-CCAAAATGCAAAACC
*
314601 AAAATCTGGATAAAATCCAAAATG
1 AAAATCT-GACAAAATCCAAAATG
314625 AAGAAAGAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
29 8 0.16
30 7 0.14
31 15 0.31
32 18 0.37
33 1 0.02
ACGTcount: A:0.55, C:0.20, G:0.11, T:0.14
Consensus pattern (30 bp):
AAAATCTGACAAAATCCAAAATGCAAAACC
Found at i:314636 original size:31 final size:32
Alignment explanation
Indices: 314540--314640 Score: 88
Period size: 31 Copynumber: 3.3 Consensus size: 32
314530 AAAACTAAAT
* *
314540 AAAATCTG-AGAAAAT-CCAAAGA-GC-AAACC
1 AAAATCTGAACAAAATCCCAAA-ATGCAAAAAC
*
314569 AAAATCTGAACAAAATCCCAAAATGCAAAACC
1 AAAATCTGAACAAAATCCCAAAATGCAAAAAC
* * *
314601 AAAATCTGGATAAAAT-CCAAAATG-AAGAAAG
1 AAAATCTGAACAAAATCCCAAAATGCAA-AAAC
314632 AAAATCTGA
1 AAAATCTGA
314641 TGAAAAAGCC
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
29 8 0.13
30 9 0.15
31 25 0.41
32 19 0.31
ACGTcount: A:0.56, C:0.18, G:0.12, T:0.14
Consensus pattern (32 bp):
AAAATCTGAACAAAATCCCAAAATGCAAAAAC
Found at i:325321 original size:70 final size:67
Alignment explanation
Indices: 325240--325372 Score: 178
Period size: 70 Copynumber: 1.9 Consensus size: 67
325230 ATCTGAATAA
* * * *
325240 AAAAGGCAAAACTACGTCGTTTTGATAAATGTTTACATT-TTCTAAAGTTAAAAATCAAAACTAT
1 AAAAGGCAAAACTACATCGTTTTAATAAATGTTT--ATTCAT-TAAA-TTAAAAAGCAAAACTAT
325304 TAAGTT
62 TAAGTT
*
325310 AAAAGGTAAAACTACATCGTTTTAATAAATGTTTATTCATTAAATTAAAAAGCAAAACTATTA
1 AAAAGGCAAAACTACATCGTTTTAATAAATGTTTATTCATTAAATTAAAAAGCAAAACTATTA
325373 TATTGTTTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
67 18 0.32
68 7 0.12
69 1 0.02
70 31 0.54
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.34
Consensus pattern (67 bp):
AAAAGGCAAAACTACATCGTTTTAATAAATGTTTATTCATTAAATTAAAAAGCAAAACTATTAAG
TT
Found at i:330425 original size:24 final size:25
Alignment explanation
Indices: 330393--330444 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
330383 TTGAAATTAA
*
330393 AAAAATT-AAATTATTTCCATGTTC
1 AAAAATTAAAATTATTTCCATATTC
*
330417 AAAAATTAAAATTATTTCCTTATTC
1 AAAAATTAAAATTATTTCCATATTC
330442 AAA
1 AAA
330445 TGCTTAACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (25 bp):
AAAAATTAAAATTATTTCCATATTC
Found at i:332792 original size:33 final size:31
Alignment explanation
Indices: 332726--332789 Score: 74
Period size: 35 Copynumber: 1.9 Consensus size: 31
332716 GTCCGATCCG
*
332726 AATTTAATTTAAATAATAAAAAATTAATTTTA
1 AATTTAATTTAAATAATAAAAAATCAA-TTTA
*
332758 AATTTAATTATAAAATATATAAAATATCAATT
1 AATTTAATT-T-AAATA-ATAAAAAATCAATT
332790 AAAAATACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 9 0.33
33 1 0.04
34 7 0.26
35 10 0.37
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (31 bp):
AATTTAATTTAAATAATAAAAAATCAATTTA
Done.