Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010603.1 Kokia drynarioides strain JFW-HI SEQ_125534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4898
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:3472 original size:30 final size:31

Alignment explanation


    Indices: 3434--3505  Score: 78
    Period size: 31  Copynumber: 2.4  Consensus size: 31

       3424 AAATGGATTA

                                       *   
       3434 ATTT-TTTAACATA-AAAGACTAATTTTCTC
          1 ATTTGTTTAACATACAAAGACTAATTTACTC

                       *     **             
       3463 -TTTGATTTAATATACAGCGACTAATTTACTC
          1 ATTTG-TTTAACATACAAAGACTAATTTACTC

                        
       3494 ATTTGTTTAACA
          1 ATTTGTTTAACA

       3506 GAAGGGAAAA


Statistics
Matches: 34,  Mismatches: 5, Indels: 6
        0.76            0.11        0.13

Matches are distributed among these distances:
  28    3  0.09
  30    8  0.24
  31   19  0.56
  32    4  0.12

ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44


Consensus pattern (31 bp):   
ATTTGTTTAACATACAAAGACTAATTTACTC
Done.