Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001062.1 Kokia drynarioides strain JFW-HI SEQ_112311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3791
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33


Found at i:557 original size:20 final size:21

Alignment explanation


    Indices: 521--571  Score: 54
    Period size: 20  Copynumber: 2.5  Consensus size: 21

        511 ATTGGTATGG

                             *    
        521 TTTATATTAAGTGTAAATA-GA
          1 TTTA-ATTAAGTGTAAAAATGA

                                  
        542 TTTAATTAAGAT-TAAAAATGA
          1 TTTAATTAAG-TGTAAAAATGA

                      
        563 -TTAATTAAG
          1 TTTAATTAAG

        572 GCTTAATGAT


Statistics
Matches: 27,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  20   20  0.74
  21    7  0.26

ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41


Consensus pattern (21 bp):   
TTTAATTAAGTGTAAAAATGA
Done.