Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010625.1 Kokia drynarioides strain JFW-HI SEQ_125561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31


Found at i:191 original size:26 final size:26

Alignment explanation


    Indices: 158--222  Score: 78
    Period size: 26  Copynumber: 2.5  Consensus size: 26

        148 TCCTGTAGCA

                      *                
        158 ACAATTTTGGGCAT-GCTCATGCAGCG
          1 ACAATTTTGGACATCG-TCATGCAGCG

               *                 *  * 
        184 ACATTTTTGGACATCGTCATGTAGTG
          1 ACAATTTTGGACATCGTCATGCAGCG

                         
        210 ACAATTTTGGACA
          1 ACAATTTTGGACA

        223 CAATTCTAAA


Statistics
Matches: 33,  Mismatches: 5, Indels: 2
        0.82            0.12        0.05

Matches are distributed among these distances:
  26   32  0.97
  27    1  0.03

ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32


Consensus pattern (26 bp):   
ACAATTTTGGACATCGTCATGCAGCG

Found at i:716 original size:33 final size:33

Alignment explanation


    Indices: 670--739  Score: 124
    Period size: 33  Copynumber: 2.2  Consensus size: 33

        660 CCGCTGCCAA

                    *                        
        670 AGTTTTGCTATCAAATTTCTTTTGGCCTACCTT
          1 AGTTTTGCAATCAAATTTCTTTTGGCCTACCTT

                                             
        703 AGTTTTGCAATCAAATTTCTTTTGGCCTACCTT
          1 AGTTTTGCAATCAAATTTCTTTTGGCCTACCTT

                 
        736 -GTTT
          1 AGTTT

        740 AAAGATGCAC


Statistics
Matches: 36,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  32    4  0.11
  33   32  0.89

ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49


Consensus pattern (33 bp):   
AGTTTTGCAATCAAATTTCTTTTGGCCTACCTT
Done.