Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010637.1 Kokia drynarioides strain JFW-HI SEQ_125577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6096
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37

Warning! 86 characters in sequence are not A, C, G, or T


Found at i:5898 original size:19 final size:19

Alignment explanation


    Indices: 5865--5911  Score: 60
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       5855 AACTCCAAAA

                               
       5865 TTAAAAATTTGTTTT-TTC
          1 TTAAAAATTTGTTTTATTC

                       *       *
       5883 TTAAAGAATTTTTTTTATTT
          1 TTAAA-AATTTGTTTTATTC

                     
       5903 TTAAAAATT
          1 TTAAAAATT

       5912 ATATTATTTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  18    5  0.20
  19   13  0.52
  20    7  0.28

ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60


Consensus pattern (19 bp):   
TTAAAAATTTGTTTTATTC
Done.