Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010641.1 Kokia drynarioides strain JFW-HI SEQ_125582, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5665
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34


Found at i:182 original size:21 final size:23

Alignment explanation


    Indices: 146--205  Score: 65
    Period size: 21  Copynumber: 2.8  Consensus size: 23

        136 TTCATTAATA

                  *  *             
        146 TAATAAAATAATATTAATTA-AT
          1 TAATAATATTATATTAATTATAT

                                   
        168 TAATAAT-TTATATT-ATTATAT
          1 TAATAATATTATATTAATTATAT

             *                
        189 TTATAATATTA-ATTAAT
          1 TAATAATATTATATTAAT

        206 AATAATTTAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 6
        0.78            0.07        0.15

Matches are distributed among these distances:
  20    4  0.12
  21   17  0.53
  22   11  0.34

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (23 bp):   
TAATAATATTATATTAATTATAT
Done.