Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010649.1 Kokia drynarioides strain JFW-HI SEQ_125592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3227
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:2887 original size:21 final size:21

Alignment explanation


    Indices: 2861--2903  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2851 TAGGGTCCAT

                         *       
       2861 TTGCCCTGGAGGAGTAGAGTA
          1 TTGCCCTGGAGGAATAGAGTA

                                 
       2882 TTGCCCTGGAGGAATAGAGTA
          1 TTGCCCTGGAGGAATAGAGTA

             
       2903 T
          1 T

       2904 CGCGATGGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.26, C:0.14, G:0.35, T:0.26


Consensus pattern (21 bp):   
TTGCCCTGGAGGAATAGAGTA

Found at i:3028 original size:45 final size:45

Alignment explanation


    Indices: 2898--3034  Score: 175
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       2888 TGGAGGAATA

                  *   *              *  *       *   **   
       2898 GAGTATCGCGATGGCTCGTCAAACTCAGCCTGATATTCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                   *                  *  
       2943 GAGTATTGCGGTGGCTCGTCAAATTGAGGCTGATATCCTTGGTTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

                                         *            *  
       2988 GAGTATTGCGGTGGCTCGTCAAACTGAGGTTGATATCCTTGGGTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT

              
       3033 GA
          1 GA

       3035 TGAGCTATGC


Statistics
Matches: 80,  Mismatches: 12, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  45   80  1.00

ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
Done.