genome.fa.s10660.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01010660.1 Kokia drynarioides strain JFW-HI SEQ_125604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179113

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--34	13	2.5	13	90	9	50	0	21	0	78	0.75
1--46	11	4.3	11	81	13	51	2	23	0	73	0.94
1051--1105	27	2.0	28	82	3	67	34	1	12	50	1.51
1760--1803	20	2.2	20	91	4	70	25	0	2	72	0.96
5051--5101	22	2.3	22	100	0	102	62	7	19	9	1.50
7372--7406	12	2.9	12	87	12	54	82	5	0	11	0.82
8471--8517	23	2.0	25	87	8	71	53	6	4	36	1.46
15733--15804	22	3.0	25	68	17	71	52	27	5	13	1.63
16470--16513	17	2.6	17	85	0	52	22	2	9	65	1.32
17617--17685	29	2.3	29	80	9	77	44	5	15	33	1.71
17650--17775	60	2.1	60	83	5	157	43	8	11	35	1.73
23879--23918	19	2.1	19	86	9	55	22	0	0	77	0.77
23876--23931	24	2.3	24	81	6	69	26	0	0	73	0.84
25357--25384	2	14.0	2	100	0	56	50	0	0	50	1.00
28114--28172	30	2.0	31	83	6	77	32	11	6	49	1.66
30062--30107	17	2.9	16	84	9	58	28	2	0	69	1.00
35090--35135	18	2.6	18	89	0	65	23	8	32	34	1.86
39791--39981	104	1.8	104	84	2	258	33	25	12	28	1.92
44289--44343	17	3.1	17	80	10	65	63	3	1	30	1.22
47430--47480	2	25.5	2	87	0	66	45	1	5	47	1.38
48269--48311	21	2.1	20	83	12	52	34	0	6	58	1.25
50616--50683	28	2.5	28	80	7	77	51	5	7	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51944--51992	25	2.0	25	92	4	82	48	20	14	16	1.80
51338--52569	621	2.0	626	92	2	2037	37	11	16	34	1.85
53927--54106	65	2.8	63	84	12	260	43	0	3	52	1.19
53982--54015	15	2.3	15	89	0	50	26	0	0	73	0.83
59117--59153	12	3.0	12	88	4	56	83	0	16	0	0.64
59116--59153	13	3.0	13	88	7	60	84	0	15	0	0.63
60535--61591	40	26.7	40	76	9	880	32	24	17	25	1.96
60505--61591	79	13.7	79	80	6	731	32	24	16	25	1.96
60535--61591	119	8.9	117	75	11	739	32	24	17	25	1.96
60535--61618	158	6.8	158	81	7	855	32	24	17	25	1.96
62120--62295	59	2.8	63	86	10	263	44	0	3	51	1.20
69186--69231	25	1.9	23	86	8	65	36	4	4	54	1.40
75134--75184	18	2.8	18	80	8	68	29	0	0	70	0.87
87449--87525	40	1.9	40	91	0	127	29	27	19	23	1.98
90398--90605	110	1.9	109	83	4	267	23	25	18	33	1.97
103804--104053	72	3.4	71	85	7	331	29	8	2	59	1.41
103850--104051	19	10.9	18	68	19	103	29	9	2	58	1.42
104348--104393	21	2.2	21	88	11	69	30	17	28	23	1.97
104948--105067	58	2.1	58	90	3	188	32	0	20	47	1.50
107640--107679	21	1.9	21	84	0	53	65	2	2	30	1.19
111180--111502	29	11.0	29	76	9	235	41	3	20	34	1.69
111298--111497	30	6.8	28	73	14	111	44	3	16	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112183--112226	14	2.9	15	86	6	54	13	13	11	61	1.57
112429--112453	13	1.9	13	100	0	50	48	8	8	36	1.62
113145--113217	6	12.7	6	72	13	55	56	2	2	38	1.28
113167--113213	11	4.2	11	79	15	60	57	4	0	38	1.18
113138--113213	17	4.5	18	77	8	72	55	2	2	39	1.28
113164--113217	23	2.3	23	90	6	83	59	3	0	37	1.15
113168--113219	17	3.1	16	78	13	59	59	3	0	36	1.16
118848--118882	18	1.9	18	88	0	52	42	2	0	54	1.15
121269--121334	34	1.9	34	93	0	114	37	13	18	30	1.89
122764--122830	26	2.6	27	86	13	90	53	0	2	43	1.16
122821--122858	11	3.5	11	82	17	53	47	0	0	52	1.00
124172--124218	23	2.0	24	88	8	71	65	4	0	29	1.11
127593--127632	9	4.3	9	87	12	55	25	0	0	75	0.81
127591--127631	14	3.0	14	89	3	66	26	0	0	73	0.84
128841--129022	30	6.1	29	75	7	159	40	21	1	36	1.63
129265--129306	21	1.9	23	85	9	61	45	9	4	40	1.58
132973--133003	14	2.2	14	94	0	53	51	0	0	48	1.00
134111--134135	2	12.5	2	100	0	50	48	0	0	52	1.00
134133--134183	4	12.8	4	100	0	102	25	0	23	50	1.49
134243--134369	25	5.0	25	67	15	82	25	19	27	27	1.99
134241--134382	51	2.8	51	87	0	212	24	19	26	28	1.99
134245--134404	51	3.1	49	78	8	169	24	20	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144398--144502	33	3.2	33	73	9	99	43	2	1	51	1.27
144385--144509	64	1.9	66	83	6	166	42	3	2	52	1.30
145483--145512	13	2.3	13	100	0	60	26	13	0	60	1.34
149379--149421	19	2.3	19	95	0	77	62	9	6	20	1.48
151032--151061	15	2.0	15	93	0	51	23	0	0	76	0.78
152511--152820	30	10.5	30	87	4	432	28	2	33	35	1.71
152511--152820	59	5.2	59	91	0	485	28	2	33	35	1.71
154590--154707	6	20.2	6	68	20	72	54	2	0	42	1.20
154590--154673	17	4.9	17	83	2	114	53	2	1	42	1.21
154609--154691	11	7.2	11	71	16	62	54	3	1	40	1.26
154590--154707	35	3.2	36	80	12	116	54	2	0	42	1.20
161288--161331	22	2.0	22	90	0	70	61	15	9	13	1.56
163902--163976	5	14.0	5	78	10	51	38	24	4	33	1.74
166584--166792	29	7.1	29	71	15	153	32	5	29	33	1.81
166550--166799	59	4.2	59	86	4	308	32	5	29	33	1.80
166540--166792	29	8.6	27	71	14	150	30	5	28	34	1.80
168609--168694	17	4.8	18	78	13	72	51	6	2	39	1.42
171494--171523	15	2.0	15	100	0	60	33	33	6	26	1.83
172190--172222	17	1.9	17	93	0	57	21	15	21	42	1.89
177751--177949	30	6.7	29	78	10	197	32	3	27	37	1.74
177782--177961	58	3.1	59	91	3	283	32	3	29	34	1.76
177777--177954	29	6.1	29	79	12	193	30	4	29	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177777--177961	30	6.3	30	79	10	202	31	4	29	34	1.77
177820--177971	29	5.2	28	71	13	119	32	4	27	35	1.77
177790--177980	59	3.2	59	90	2	285	31	4	28	35	1.78

Tables:   1

The End!