Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01010663.1 Kokia drynarioides strain JFW-HI SEQ_125608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29


Found at i:658 original size:71 final size:71

Alignment explanation


    Indices: 574--715  Score: 239
    Period size: 71  Copynumber: 2.0  Consensus size: 71

        564 ATATAAAATT

                                            *                         *      
        574 CATAGAAATTACTCACCAAATTCCACTCCACCGTCCACCAACTAAAAAACTTCCTCCAGAAACCT
          1 CATAGAAATTACTCACCAAATTCCACTCCACCATCCACCAACTAAAAAACTTCCTCCAAAAACCT

                  
        639 TCAATG
         66 TCAATG

                                                 *   *              *        
        645 CATAGAAATTACTCACCAAATTCCACTCCACCATCCATCAATTAAAAAACTTCCTCTAAAAACCT
          1 CATAGAAATTACTCACCAAATTCCACTCCACCATCCACCAACTAAAAAACTTCCTCCAAAAACCT

                  
        710 TCAATG
         66 TCAATG

        716 AACCTACATT


Statistics
Matches: 66,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  71   66  1.00

ACGTcount: A:0.39, C:0.33, G:0.04, T:0.23


Consensus pattern (71 bp):   
CATAGAAATTACTCACCAAATTCCACTCCACCATCCACCAACTAAAAAACTTCCTCCAAAAACCT
TCAATG
Done.